Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02179 and ECD_02180 are separated by 3 nucleotides ECD_02180 and ECD_02181 overlap by 1 nucleotides
ECD_02179: ECD_02179 - uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent, at 2,256,084 to 2,257,241
_02179
ECD_02180: ECD_02180 - undecaprenyl phosphate-L-Ara4FN transferase, at 2,257,245 to 2,258,213
_02180
ECD_02181: ECD_02181 - fused UDP-L-Ara4N formyltransferase/UDP-GlcA C-4'-decarboxylase, at 2,258,213 to 2,260,195
_02181
Position (kb)
2257
2258
2259 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2256.287 kb on + strand, within ECD_02179 at 2256.365 kb on + strand, within ECD_02179 at 2256.455 kb on + strand, within ECD_02179 at 2256.489 kb on + strand, within ECD_02179 at 2256.489 kb on + strand, within ECD_02179 at 2256.489 kb on + strand, within ECD_02179 at 2256.509 kb on + strand, within ECD_02179 at 2256.581 kb on + strand, within ECD_02179 at 2256.585 kb on + strand, within ECD_02179 at 2256.585 kb on + strand, within ECD_02179 at 2256.588 kb on + strand, within ECD_02179 at 2256.602 kb on + strand, within ECD_02179 at 2256.644 kb on + strand, within ECD_02179 at 2256.650 kb on + strand, within ECD_02179 at 2256.803 kb on + strand, within ECD_02179 at 2256.803 kb on + strand, within ECD_02179 at 2256.803 kb on + strand, within ECD_02179 at 2256.807 kb on + strand, within ECD_02179 at 2256.937 kb on + strand, within ECD_02179 at 2257.066 kb on + strand, within ECD_02179 at 2257.239 kb on + strand at 2257.412 kb on + strand, within ECD_02180 at 2257.448 kb on + strand, within ECD_02180 at 2257.528 kb on + strand, within ECD_02180 at 2257.532 kb on + strand, within ECD_02180 at 2257.624 kb on + strand, within ECD_02180 at 2257.655 kb on + strand, within ECD_02180 at 2257.727 kb on + strand, within ECD_02180 at 2257.843 kb on + strand, within ECD_02180 at 2257.878 kb on + strand, within ECD_02180 at 2257.928 kb on + strand, within ECD_02180 at 2257.946 kb on + strand, within ECD_02180 at 2257.946 kb on + strand, within ECD_02180 at 2257.970 kb on + strand, within ECD_02180 at 2257.970 kb on + strand, within ECD_02180 at 2257.988 kb on + strand, within ECD_02180 at 2258.057 kb on + strand, within ECD_02180 at 2258.078 kb on + strand, within ECD_02180 at 2258.084 kb on + strand, within ECD_02180 at 2258.113 kb on + strand, within ECD_02180 at 2258.124 kb on + strand at 2258.336 kb on + strand at 2258.459 kb on + strand, within ECD_02181 at 2258.515 kb on + strand, within ECD_02181 at 2258.602 kb on + strand, within ECD_02181 at 2258.602 kb on + strand, within ECD_02181 at 2258.689 kb on + strand, within ECD_02181 at 2258.701 kb on + strand, within ECD_02181 at 2258.845 kb on + strand, within ECD_02181 at 2258.874 kb on + strand, within ECD_02181 at 2258.874 kb on + strand, within ECD_02181 at 2258.874 kb on + strand, within ECD_02181 at 2258.912 kb on + strand, within ECD_02181 at 2258.912 kb on + strand, within ECD_02181 at 2258.912 kb on + strand, within ECD_02181 at 2258.912 kb on + strand, within ECD_02181 at 2258.912 kb on + strand, within ECD_02181 at 2258.912 kb on + strand, within ECD_02181 at 2259.067 kb on + strand, within ECD_02181 at 2259.070 kb on + strand, within ECD_02181 at 2259.070 kb on + strand, within ECD_02181
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 2,256,287 + ECD_02179 0.18 +2.3 2,256,365 + ECD_02179 0.24 +1.9 2,256,455 + ECD_02179 0.32 +2.9 2,256,489 + ECD_02179 0.35 +2.0 2,256,489 + ECD_02179 0.35 +1.3 2,256,489 + ECD_02179 0.35 +2.3 2,256,509 + ECD_02179 0.37 +2.0 2,256,581 + ECD_02179 0.43 +1.7 2,256,585 + ECD_02179 0.43 +1.5 2,256,585 + ECD_02179 0.43 +1.6 2,256,588 + ECD_02179 0.44 +1.7 2,256,602 + ECD_02179 0.45 +1.8 2,256,644 + ECD_02179 0.48 +2.3 2,256,650 + ECD_02179 0.49 +1.3 2,256,803 + ECD_02179 0.62 +1.7 2,256,803 + ECD_02179 0.62 +2.2 2,256,803 + ECD_02179 0.62 +1.1 2,256,807 + ECD_02179 0.62 +1.1 2,256,937 + ECD_02179 0.74 +1.7 2,257,066 + ECD_02179 0.85 +1.1 2,257,239 + +2.1 2,257,412 + ECD_02180 0.17 +1.2 2,257,448 + ECD_02180 0.21 +1.2 2,257,528 + ECD_02180 0.29 +1.6 2,257,532 + ECD_02180 0.30 +1.2 2,257,624 + ECD_02180 0.39 +1.4 2,257,655 + ECD_02180 0.42 +1.2 2,257,727 + ECD_02180 0.50 +2.8 2,257,843 + ECD_02180 0.62 +1.7 2,257,878 + ECD_02180 0.65 -0.3 2,257,928 + ECD_02180 0.70 +0.8 2,257,946 + ECD_02180 0.72 +1.2 2,257,946 + ECD_02180 0.72 +1.6 2,257,970 + ECD_02180 0.75 +2.7 2,257,970 + ECD_02180 0.75 +2.1 2,257,988 + ECD_02180 0.77 +1.1 2,258,057 + ECD_02180 0.84 +1.5 2,258,078 + ECD_02180 0.86 +1.2 2,258,084 + ECD_02180 0.87 +1.7 2,258,113 + ECD_02180 0.90 +1.4 2,258,124 + +2.1 2,258,336 + -0.4 2,258,459 + ECD_02181 0.12 +1.3 2,258,515 + ECD_02181 0.15 +1.5 2,258,602 + ECD_02181 0.20 +1.5 2,258,602 + ECD_02181 0.20 +1.4 2,258,689 + ECD_02181 0.24 +1.7 2,258,701 + ECD_02181 0.25 +1.8 2,258,845 + ECD_02181 0.32 +1.4 2,258,874 + ECD_02181 0.33 +1.8 2,258,874 + ECD_02181 0.33 +2.1 2,258,874 + ECD_02181 0.33 +2.6 2,258,912 + ECD_02181 0.35 +0.9 2,258,912 + ECD_02181 0.35 +1.5 2,258,912 + ECD_02181 0.35 +1.6 2,258,912 + ECD_02181 0.35 +1.8 2,258,912 + ECD_02181 0.35 +2.9 2,258,912 + ECD_02181 0.35 +2.2 2,259,067 + ECD_02181 0.43 +1.6 2,259,070 + ECD_02181 0.43 +1.2 2,259,070 + ECD_02181 0.43 +1.8
Or see this region's nucleotide sequence