Strain Fitness in Escherichia coli BL21 around ECD_02122

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02121 and ECD_02122 overlap by 4 nucleotidesECD_02122 and ECD_02123 overlap by 4 nucleotides ECD_02121: ECD_02121 - heme lyase, CcmH subunit, at 2,185,008 to 2,186,060 _02121 ECD_02122: ECD_02122 - periplasmic thioredoxin of cytochrome c-type biogenesis, at 2,186,057 to 2,186,614 _02122 ECD_02123: ECD_02123 - heme lyase, CcmF subunit, at 2,186,611 to 2,188,554 _02123 Position (kb) 2186 2187Strain fitness (log2 ratio) -1 0 1 2at 2185.166 kb on - strand, within ECD_02121at 2185.174 kb on - strand, within ECD_02121at 2185.174 kb on - strand, within ECD_02121at 2185.328 kb on - strand, within ECD_02121at 2185.347 kb on - strand, within ECD_02121at 2185.383 kb on - strand, within ECD_02121at 2185.383 kb on - strand, within ECD_02121at 2185.383 kb on - strand, within ECD_02121at 2185.396 kb on - strand, within ECD_02121at 2185.397 kb on + strand, within ECD_02121at 2185.397 kb on + strand, within ECD_02121at 2185.549 kb on + strand, within ECD_02121at 2185.568 kb on - strand, within ECD_02121at 2185.620 kb on - strand, within ECD_02121at 2185.702 kb on + strand, within ECD_02121at 2185.703 kb on - strand, within ECD_02121at 2185.705 kb on - strand, within ECD_02121at 2185.705 kb on - strand, within ECD_02121at 2185.705 kb on - strand, within ECD_02121at 2185.728 kb on - strand, within ECD_02121at 2185.815 kb on - strand, within ECD_02121at 2185.815 kb on - strand, within ECD_02121at 2185.815 kb on - strand, within ECD_02121at 2185.815 kb on - strand, within ECD_02121at 2185.817 kb on - strand, within ECD_02121at 2185.817 kb on - strand, within ECD_02121at 2186.080 kb on - strandat 2186.300 kb on - strand, within ECD_02122at 2186.301 kb on + strand, within ECD_02122at 2186.601 kb on - strandat 2186.859 kb on - strand, within ECD_02123at 2186.874 kb on - strand, within ECD_02123at 2187.036 kb on - strand, within ECD_02123at 2187.036 kb on - strand, within ECD_02123

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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2,185,166 - ECD_02121 0.15 -0.1
2,185,174 - ECD_02121 0.16 -1.0
2,185,174 - ECD_02121 0.16 -0.0
2,185,328 - ECD_02121 0.30 -1.0
2,185,347 - ECD_02121 0.32 +0.2
2,185,383 - ECD_02121 0.36 +1.3
2,185,383 - ECD_02121 0.36 +0.1
2,185,383 - ECD_02121 0.36 +0.5
2,185,396 - ECD_02121 0.37 -0.5
2,185,397 + ECD_02121 0.37 -0.2
2,185,397 + ECD_02121 0.37 -1.3
2,185,549 + ECD_02121 0.51 -0.3
2,185,568 - ECD_02121 0.53 -0.8
2,185,620 - ECD_02121 0.58 -0.8
2,185,702 + ECD_02121 0.66 -1.0
2,185,703 - ECD_02121 0.66 +0.6
2,185,705 - ECD_02121 0.66 -0.1
2,185,705 - ECD_02121 0.66 +0.1
2,185,705 - ECD_02121 0.66 -1.5
2,185,728 - ECD_02121 0.68 +1.5
2,185,815 - ECD_02121 0.77 -1.6
2,185,815 - ECD_02121 0.77 +1.1
2,185,815 - ECD_02121 0.77 +2.1
2,185,815 - ECD_02121 0.77 +0.3
2,185,817 - ECD_02121 0.77 -0.5
2,185,817 - ECD_02121 0.77 -0.4
2,186,080 - -0.5
2,186,300 - ECD_02122 0.44 -0.3
2,186,301 + ECD_02122 0.44 -0.7
2,186,601 - -0.3
2,186,859 - ECD_02123 0.13 -0.1
2,186,874 - ECD_02123 0.14 -0.9
2,187,036 - ECD_02123 0.22 +0.2
2,187,036 - ECD_02123 0.22 -0.3

Or see this region's nucleotide sequence