Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02121 and ECD_02122 overlap by 4 nucleotides ECD_02122 and ECD_02123 overlap by 4 nucleotides
ECD_02121: ECD_02121 - heme lyase, CcmH subunit, at 2,185,008 to 2,186,060
_02121
ECD_02122: ECD_02122 - periplasmic thioredoxin of cytochrome c-type biogenesis, at 2,186,057 to 2,186,614
_02122
ECD_02123: ECD_02123 - heme lyase, CcmF subunit, at 2,186,611 to 2,188,554
_02123
Position (kb)
2186
2187 Strain fitness (log2 ratio)
-1
0
1
2 at 2185.166 kb on - strand, within ECD_02121 at 2185.174 kb on - strand, within ECD_02121 at 2185.174 kb on - strand, within ECD_02121 at 2185.328 kb on - strand, within ECD_02121 at 2185.347 kb on - strand, within ECD_02121 at 2185.383 kb on - strand, within ECD_02121 at 2185.383 kb on - strand, within ECD_02121 at 2185.383 kb on - strand, within ECD_02121 at 2185.396 kb on - strand, within ECD_02121 at 2185.397 kb on + strand, within ECD_02121 at 2185.397 kb on + strand, within ECD_02121 at 2185.549 kb on + strand, within ECD_02121 at 2185.568 kb on - strand, within ECD_02121 at 2185.620 kb on - strand, within ECD_02121 at 2185.702 kb on + strand, within ECD_02121 at 2185.703 kb on - strand, within ECD_02121 at 2185.705 kb on - strand, within ECD_02121 at 2185.705 kb on - strand, within ECD_02121 at 2185.705 kb on - strand, within ECD_02121 at 2185.728 kb on - strand, within ECD_02121 at 2185.815 kb on - strand, within ECD_02121 at 2185.815 kb on - strand, within ECD_02121 at 2185.815 kb on - strand, within ECD_02121 at 2185.815 kb on - strand, within ECD_02121 at 2185.817 kb on - strand, within ECD_02121 at 2185.817 kb on - strand, within ECD_02121 at 2186.080 kb on - strand at 2186.300 kb on - strand, within ECD_02122 at 2186.301 kb on + strand, within ECD_02122 at 2186.601 kb on - strand at 2186.859 kb on - strand, within ECD_02123 at 2186.874 kb on - strand, within ECD_02123 at 2187.036 kb on - strand, within ECD_02123 at 2187.036 kb on - strand, within ECD_02123
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 2,185,166 - ECD_02121 0.15 -0.1 2,185,174 - ECD_02121 0.16 -1.0 2,185,174 - ECD_02121 0.16 -0.0 2,185,328 - ECD_02121 0.30 -1.0 2,185,347 - ECD_02121 0.32 +0.2 2,185,383 - ECD_02121 0.36 +1.3 2,185,383 - ECD_02121 0.36 +0.1 2,185,383 - ECD_02121 0.36 +0.5 2,185,396 - ECD_02121 0.37 -0.5 2,185,397 + ECD_02121 0.37 -0.2 2,185,397 + ECD_02121 0.37 -1.3 2,185,549 + ECD_02121 0.51 -0.3 2,185,568 - ECD_02121 0.53 -0.8 2,185,620 - ECD_02121 0.58 -0.8 2,185,702 + ECD_02121 0.66 -1.0 2,185,703 - ECD_02121 0.66 +0.6 2,185,705 - ECD_02121 0.66 -0.1 2,185,705 - ECD_02121 0.66 +0.1 2,185,705 - ECD_02121 0.66 -1.5 2,185,728 - ECD_02121 0.68 +1.5 2,185,815 - ECD_02121 0.77 -1.6 2,185,815 - ECD_02121 0.77 +1.1 2,185,815 - ECD_02121 0.77 +2.1 2,185,815 - ECD_02121 0.77 +0.3 2,185,817 - ECD_02121 0.77 -0.5 2,185,817 - ECD_02121 0.77 -0.4 2,186,080 - -0.5 2,186,300 - ECD_02122 0.44 -0.3 2,186,301 + ECD_02122 0.44 -0.7 2,186,601 - -0.3 2,186,859 - ECD_02123 0.13 -0.1 2,186,874 - ECD_02123 0.14 -0.9 2,187,036 - ECD_02123 0.22 +0.2 2,187,036 - ECD_02123 0.22 -0.3
Or see this region's nucleotide sequence