Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02051 and ECD_02052 are separated by 124 nucleotides ECD_02052 and ECD_02053 are separated by 40 nucleotides ECD_02053 and ECD_02054 are separated by 46 nucleotides ECD_02054 and ECD_02055 overlap by 4 nucleotides
ECD_02051: ECD_02051 - hypothetical protein, at 2,103,962 to 2,105,962
_02051
ECD_02052: ECD_02052 - lipoprotein, DUF1307 family, at 2,106,087 to 2,106,548
_02052
ECD_02053: ECD_02053 - DUF1456 family protein, at 2,106,589 to 2,107,059
_02053
ECD_02054: ECD_02054 - putative response regulator in two-component system withYehU, at 2,107,106 to 2,107,825
_02054
ECD_02055: ECD_02055 - inner membrane putative sensory kinase in two-component system with YehT, at 2,107,822 to 2,109,507
_02055
Position (kb)
2106
2107
2108 Strain fitness (log2 ratio)
-1
0
1 at 2105.746 kb on + strand, within ECD_02051 at 2105.792 kb on - strand at 2106.027 kb on - strand at 2106.032 kb on - strand at 2106.101 kb on + strand at 2106.219 kb on + strand, within ECD_02052 at 2106.219 kb on + strand, within ECD_02052 at 2106.219 kb on + strand, within ECD_02052 at 2106.226 kb on - strand, within ECD_02052 at 2106.245 kb on + strand, within ECD_02052 at 2106.494 kb on + strand, within ECD_02052 at 2106.991 kb on - strand, within ECD_02053 at 2107.025 kb on + strand at 2107.026 kb on - strand at 2107.055 kb on - strand at 2107.055 kb on - strand at 2107.335 kb on + strand, within ECD_02054 at 2107.336 kb on - strand, within ECD_02054 at 2107.597 kb on + strand, within ECD_02054 at 2107.598 kb on - strand, within ECD_02054 at 2107.866 kb on - strand at 2107.866 kb on - strand at 2107.866 kb on - strand at 2107.870 kb on - strand at 2107.922 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 2,105,746 + ECD_02051 0.89 +0.9 2,105,792 - -0.8 2,106,027 - -0.8 2,106,032 - +0.1 2,106,101 + -0.7 2,106,219 + ECD_02052 0.29 +0.2 2,106,219 + ECD_02052 0.29 -0.7 2,106,219 + ECD_02052 0.29 +0.4 2,106,226 - ECD_02052 0.30 -1.2 2,106,245 + ECD_02052 0.34 -0.3 2,106,494 + ECD_02052 0.88 +0.1 2,106,991 - ECD_02053 0.85 -0.1 2,107,025 + -1.1 2,107,026 - -0.3 2,107,055 - +1.2 2,107,055 - -0.7 2,107,335 + ECD_02054 0.32 +0.2 2,107,336 - ECD_02054 0.32 +0.2 2,107,597 + ECD_02054 0.68 -0.3 2,107,598 - ECD_02054 0.68 -1.0 2,107,866 - -1.4 2,107,866 - -0.6 2,107,866 - -1.1 2,107,870 - +0.2 2,107,922 - +1.7
Or see this region's nucleotide sequence