Strain Fitness in Escherichia coli BL21 around ECD_01853

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01851 and ECD_01852 are separated by 201 nucleotidesECD_01852 and ECD_01853 are separated by 10 nucleotidesECD_01853 and ECD_01854 are separated by 14 nucleotides ECD_01851: ECD_01851 - flagellin export apparatus, substrate specificity protein, at 1,910,961 to 1,912,109 _01851 ECD_01852: ECD_01852 - chemotaxis regulator, protein phosphatase for CheY, at 1,912,311 to 1,912,955 _01852 ECD_01853: ECD_01853 - chemotaxis regulator transmitting signal to flagellar motor component, at 1,912,966 to 1,913,355 _01853 ECD_01854: ECD_01854 - fused chemotaxis regulator: protein-glutamate methylesterase in two-component regulatory system with CheA, at 1,913,370 to 1,914,419 _01854 Position (kb) 1912 1913 1914Strain fitness (log2 ratio) -2 -1 0 1 2at 1912.131 kb on - strandat 1912.131 kb on - strandat 1912.131 kb on - strandat 1912.131 kb on - strandat 1912.228 kb on + strandat 1912.574 kb on + strand, within ECD_01852at 1912.786 kb on + strand, within ECD_01852at 1912.786 kb on + strand, within ECD_01852at 1913.193 kb on + strand, within ECD_01853at 1913.375 kb on + strandat 1913.375 kb on + strandat 1913.459 kb on + strandat 1913.640 kb on + strand, within ECD_01854at 1914.006 kb on - strand, within ECD_01854at 1914.065 kb on - strand, within ECD_01854

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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1,912,131 - +1.4
1,912,131 - +1.3
1,912,131 - +1.5
1,912,131 - -0.8
1,912,228 + -1.8
1,912,574 + ECD_01852 0.41 -0.3
1,912,786 + ECD_01852 0.74 +0.7
1,912,786 + ECD_01852 0.74 +0.9
1,913,193 + ECD_01853 0.58 +1.9
1,913,375 + +1.2
1,913,375 + -0.2
1,913,459 + +0.2
1,913,640 + ECD_01854 0.26 +1.7
1,914,006 - ECD_01854 0.61 +1.1
1,914,065 - ECD_01854 0.66 +1.2

Or see this region's nucleotide sequence