Strain Fitness in Escherichia coli BL21 around ECD_01617

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01615 and ECD_01616 are separated by 0 nucleotidesECD_01616 and ECD_01617 are separated by 80 nucleotidesECD_01617 and ECD_01618 are separated by 48 nucleotidesECD_01618 and ECD_01619 are separated by 102 nucleotides ECD_01615: ECD_01615 - putative efflux protein (PET) component of YdhJK efflux pump, at 1,667,317 to 1,669,329 _01615 ECD_01616: ECD_01616 - superoxide dismutase, Cu, Zn, periplasmic, at 1,669,330 to 1,669,851 _01616 ECD_01617: ECD_01617 - putative oxidoreductase, at 1,669,932 to 1,670,828 _01617 ECD_01618: ECD_01618 - DUF1289 family protein, at 1,670,877 to 1,671,116 _01618 ECD_01619: ECD_01619 - transcriptional repressor for the nemRA-gloA operon, quinone-, glyoxal-, and HOCl-activated, at 1,671,219 to 1,671,818 _01619 Position (kb) 1669 1670 1671Strain fitness (log2 ratio) -1 0 1 2 3at 1668.965 kb on - strand, within ECD_01615at 1669.396 kb on - strand, within ECD_01616at 1669.840 kb on - strandat 1670.165 kb on - strand, within ECD_01617at 1670.666 kb on - strand, within ECD_01617at 1670.817 kb on - strandat 1671.319 kb on + strand, within ECD_01619at 1671.354 kb on + strand, within ECD_01619at 1671.371 kb on + strand, within ECD_01619at 1671.371 kb on + strand, within ECD_01619at 1671.486 kb on + strand, within ECD_01619at 1671.581 kb on + strand, within ECD_01619at 1671.581 kb on + strand, within ECD_01619

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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1,668,965 - ECD_01615 0.82 -0.1
1,669,396 - ECD_01616 0.13 +0.3
1,669,840 - +0.1
1,670,165 - ECD_01617 0.26 -0.1
1,670,666 - ECD_01617 0.82 +0.1
1,670,817 - +0.2
1,671,319 + ECD_01619 0.17 +1.5
1,671,354 + ECD_01619 0.23 +2.2
1,671,371 + ECD_01619 0.25 +1.7
1,671,371 + ECD_01619 0.25 +2.4
1,671,486 + ECD_01619 0.45 +2.2
1,671,581 + ECD_01619 0.60 +2.8
1,671,581 + ECD_01619 0.60 +2.6

Or see this region's nucleotide sequence