Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01436 and ECD_01437 are separated by 133 nucleotides ECD_01437 and ECD_01438 are separated by 156 nucleotides ECD_01438 and ECD_01439 are separated by 101 nucleotides ECD_01439 and ECD_01440 are separated by 344 nucleotides
ECD_01436: ECD_01436 - ethanol-active dehydrogenase/acetaldehyde-active reductase, at 1,508,296 to 1,509,306
_01436
ECD_01437: ECD_01437 - malate dehydrogenase, decarboxylating, NAD-requiring; malic enzyme, at 1,509,440 to 1,511,137
_01437
ECD_01438: ECD_01438 - stationary-phase-induced ribosome-associated protein, at 1,511,294 to 1,511,431
_01438
ECD_01439: ECD_01439 - biofilm-dependent modulation protein, at 1,511,533 to 1,511,748
_01439
ECD_01440: ECD_01440 - lipoyl-dependent Cys-based peroxidase, hydroperoxide resistance; salt-shock inducible membrane protein; peroxiredoxin, at 1,512,093 to 1,512,524
_01440
Position (kb) 1509
1510
1511
1512 Strain fitness (log2 ratio) -1
0
1 at 1508.593 kb on - strand, within ECD_01436 at 1508.769 kb on - strand, within ECD_01436 at 1509.260 kb on + strand at 1510.139 kb on - strand, within ECD_01437 at 1510.912 kb on - strand, within ECD_01437 at 1512.053 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 1,508,593 - ECD_01436 0.29 -0.1 1,508,769 - ECD_01436 0.47 +0.8 1,509,260 + +0.4 1,510,139 - ECD_01437 0.41 -0.1 1,510,912 - ECD_01437 0.87 +1.4 1,512,053 + -1.0
Or see this region's nucleotide sequence