Strain Fitness in Escherichia coli BL21 around ECD_01225

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01224 and ECD_01225 are separated by 299 nucleotidesECD_01225 and ECD_01226 are separated by 223 nucleotidesECD_01226 and ECD_01227 are separated by 39 nucleotides ECD_01224: ECD_01224 - voltage-gated potassium channel, at 1,294,608 to 1,295,861 _01224 ECD_01225: ECD_01225 - putative DGPF domain-containing enzyme, at 1,296,161 to 1,296,457 _01225 ECD_01226: ECD_01226 - membrane spanning protein in TonB-ExbB-ExbD transport complex, at 1,296,681 to 1,297,400 _01226 ECD_01227: ECD_01227 - acyl-CoA esterase, at 1,297,440 to 1,297,838 _01227 Position (kb) 1296 1297Strain fitness (log2 ratio) -1 0 1 2 3at 1296.039 kb on + strandat 1296.220 kb on - strand, within ECD_01225at 1296.369 kb on - strand, within ECD_01225at 1296.422 kb on - strand, within ECD_01225at 1296.492 kb on - strandat 1296.765 kb on + strand, within ECD_01226at 1296.767 kb on + strand, within ECD_01226at 1296.886 kb on + strand, within ECD_01226at 1297.214 kb on + strand, within ECD_01226

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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1,296,039 + -0.2
1,296,220 - ECD_01225 0.20 +1.2
1,296,369 - ECD_01225 0.70 +2.3
1,296,422 - ECD_01225 0.88 -0.6
1,296,492 - +1.9
1,296,765 + ECD_01226 0.12 +0.8
1,296,767 + ECD_01226 0.12 +3.7
1,296,886 + ECD_01226 0.28 +0.7
1,297,214 + ECD_01226 0.74 +0.7

Or see this region's nucleotide sequence