Strain Fitness in Escherichia coli BL21 around ECD_01162

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01161 and ECD_01162 are separated by 220 nucleotidesECD_01162 and ECD_01163 are separated by 51 nucleotides ECD_01161: ECD_01161 - sodium:proton antiporter, at 1,221,324 to 1,222,865 _01161 ECD_01162: ECD_01162 - fatty acid metabolism regulon transcriptional regulator, at 1,223,086 to 1,223,805 _01162 ECD_01163: ECD_01163 - SpoVR family stationary phase protein, at 1,223,857 to 1,225,389 _01163 Position (kb) 1223 1224Strain fitness (log2 ratio) -1 0 1 2at 1222.102 kb on - strand, within ECD_01161at 1222.382 kb on - strand, within ECD_01161at 1222.501 kb on - strand, within ECD_01161at 1222.519 kb on - strand, within ECD_01161at 1222.546 kb on + strand, within ECD_01161at 1222.682 kb on - strand, within ECD_01161at 1223.026 kb on + strandat 1223.172 kb on + strand, within ECD_01162at 1223.528 kb on + strand, within ECD_01162at 1223.662 kb on + strand, within ECD_01162at 1224.091 kb on - strand, within ECD_01163at 1224.317 kb on + strand, within ECD_01163at 1224.358 kb on - strand, within ECD_01163at 1224.405 kb on - strand, within ECD_01163at 1224.418 kb on - strand, within ECD_01163at 1224.420 kb on - strand, within ECD_01163at 1224.497 kb on + strand, within ECD_01163at 1224.764 kb on - strand, within ECD_01163

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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1,222,102 - ECD_01161 0.50 +1.5
1,222,382 - ECD_01161 0.69 +1.2
1,222,501 - ECD_01161 0.76 -0.6
1,222,519 - ECD_01161 0.77 -0.6
1,222,546 + ECD_01161 0.79 +1.6
1,222,682 - ECD_01161 0.88 +1.9
1,223,026 + -0.4
1,223,172 + ECD_01162 0.12 -0.6
1,223,528 + ECD_01162 0.61 +0.4
1,223,662 + ECD_01162 0.80 -0.1
1,224,091 - ECD_01163 0.15 -0.1
1,224,317 + ECD_01163 0.30 +1.6
1,224,358 - ECD_01163 0.33 -0.5
1,224,405 - ECD_01163 0.36 -0.4
1,224,418 - ECD_01163 0.37 +0.9
1,224,420 - ECD_01163 0.37 -0.5
1,224,497 + ECD_01163 0.42 -0.4
1,224,764 - ECD_01163 0.59 +0.2

Or see this region's nucleotide sequence