Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01129 and ECD_01130 are separated by 3 nucleotides ECD_01130 and ECD_01131 are separated by 35 nucleotides ECD_01131 and ECD_01132 are separated by 53 nucleotides ECD_01132 and ECD_01133 are separated by 9 nucleotides
ECD_01129: ECD_01129 - adenylosuccinate lyase, at 1,193,983 to 1,195,353
_01129
ECD_01130: ECD_01130 - putative lysogenization regulator, at 1,195,357 to 1,195,998
_01130
ECD_01131: ECD_01131 - tRNA(Gln,Lys,Glu) U34 2-thiouridylase, at 1,196,034 to 1,197,140
_01131
ECD_01132: ECD_01132 - bifunctional thiamine pyrimidine pyrophosphate hydrolase and thiamine pyrophosphate hydrolase, at 1,197,194 to 1,197,655
_01132
ECD_01133: ECD_01133 - 23S rRNA pseudouridine(2457) synthase, at 1,197,665 to 1,198,318
_01133
Position (kb) 1196
1197
1198 Strain fitness (log2 ratio) -1
0
1
2 at 1195.529 kb on - strand, within ECD_01130 at 1195.587 kb on - strand, within ECD_01130 at 1195.587 kb on - strand, within ECD_01130 at 1195.870 kb on - strand, within ECD_01130 at 1195.870 kb on - strand, within ECD_01130 at 1195.870 kb on - strand, within ECD_01130 at 1195.870 kb on - strand, within ECD_01130 at 1195.957 kb on - strand at 1196.019 kb on - strand at 1196.029 kb on - strand at 1196.029 kb on - strand at 1197.212 kb on - strand at 1197.224 kb on - strand at 1197.581 kb on - strand, within ECD_01132 at 1197.715 kb on - strand at 1197.801 kb on + strand, within ECD_01133 at 1197.802 kb on - strand, within ECD_01133 at 1197.802 kb on - strand, within ECD_01133 at 1197.802 kb on - strand, within ECD_01133 at 1197.804 kb on - strand, within ECD_01133 at 1197.804 kb on - strand, within ECD_01133 at 1197.804 kb on - strand, within ECD_01133 at 1197.804 kb on - strand, within ECD_01133 at 1197.804 kb on - strand, within ECD_01133 at 1197.804 kb on - strand, within ECD_01133
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 1,195,529 - ECD_01130 0.27 +1.3 1,195,587 - ECD_01130 0.36 -0.4 1,195,587 - ECD_01130 0.36 -0.1 1,195,870 - ECD_01130 0.80 +0.7 1,195,870 - ECD_01130 0.80 +1.6 1,195,870 - ECD_01130 0.80 +0.5 1,195,870 - ECD_01130 0.80 +2.3 1,195,957 - -1.7 1,196,019 - +1.3 1,196,029 - +1.0 1,196,029 - +0.9 1,197,212 - +1.8 1,197,224 - +1.1 1,197,581 - ECD_01132 0.84 -0.9 1,197,715 - +0.3 1,197,801 + ECD_01133 0.21 +0.8 1,197,802 - ECD_01133 0.21 +0.3 1,197,802 - ECD_01133 0.21 +0.8 1,197,802 - ECD_01133 0.21 -1.1 1,197,804 - ECD_01133 0.21 +2.6 1,197,804 - ECD_01133 0.21 +0.3 1,197,804 - ECD_01133 0.21 +1.8 1,197,804 - ECD_01133 0.21 +1.4 1,197,804 - ECD_01133 0.21 -1.4 1,197,804 - ECD_01133 0.21 +2.0
Or see this region's nucleotide sequence