Strain Fitness in Escherichia coli BL21 around ECD_00918

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00917 and ECD_00918 are separated by 36 nucleotidesECD_00918 and ECD_00919 overlap by 4 nucleotides ECD_00917: ECD_00917 - ComEC family inner membrane protein, at 969,410 to 971,674 _00917 ECD_00918: ECD_00918 - lipid ABC transporter permease/ATPase, at 971,711 to 973,459 _00918 ECD_00919: ECD_00919 - lipid A 4'kinase, at 973,456 to 974,442 _00919 Position (kb) 971 972 973 974Strain fitness (log2 ratio) -2 -1 0 1 2at 970.806 kb on + strand, within ECD_00917at 970.914 kb on - strand, within ECD_00917at 971.048 kb on - strand, within ECD_00917at 971.048 kb on - strand, within ECD_00917at 971.122 kb on + strand, within ECD_00917at 971.123 kb on - strand, within ECD_00917at 971.123 kb on - strand, within ECD_00917at 971.124 kb on + strand, within ECD_00917at 971.124 kb on + strand, within ECD_00917at 971.124 kb on + strand, within ECD_00917at 971.125 kb on - strand, within ECD_00917at 971.236 kb on - strand, within ECD_00917at 971.236 kb on - strand, within ECD_00917at 971.408 kb on - strand, within ECD_00917at 974.417 kb on + strandat 974.440 kb on + strandat 974.440 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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970,806 + ECD_00917 0.62 -0.1
970,914 - ECD_00917 0.66 -1.8
971,048 - ECD_00917 0.72 -1.9
971,048 - ECD_00917 0.72 -0.7
971,122 + ECD_00917 0.76 -1.7
971,123 - ECD_00917 0.76 -1.2
971,123 - ECD_00917 0.76 -0.2
971,124 + ECD_00917 0.76 +0.2
971,124 + ECD_00917 0.76 -0.8
971,124 + ECD_00917 0.76 -0.3
971,125 - ECD_00917 0.76 -0.4
971,236 - ECD_00917 0.81 +0.3
971,236 - ECD_00917 0.81 +0.3
971,408 - ECD_00917 0.88 +0.4
974,417 + +1.8
974,440 + +0.1
974,440 + -0.2

Or see this region's nucleotide sequence