Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00864 and ECD_00865 are separated by 198 nucleotides ECD_00865 and ECD_00866 are separated by 290 nucleotides ECD_00866 and ECD_00867 overlap by 1 nucleotides
ECD_00864: ECD_00864 - 23S rRNA m(5)U747 methyltransferase, SAM-dependent, at 903,222 to 904,349
_00864
ECD_00865: ECD_00865 - arginine ABC transporter periplasmic binding protein, at 904,548 to 905,279
_00865
ECD_00866: ECD_00866 - arginine ABC transporter permease, at 905,570 to 906,238
_00866
ECD_00867: ECD_00867 - arginine ABC transporter permease, at 906,238 to 906,954
_00867
Position (kb) 904
905
906 Strain fitness (log2 ratio) -2
-1
0
1
2 at 903.558 kb on + strand, within ECD_00864 at 903.559 kb on - strand, within ECD_00864 at 903.572 kb on + strand, within ECD_00864 at 903.886 kb on - strand, within ECD_00864 at 903.929 kb on + strand, within ECD_00864 at 903.929 kb on + strand, within ECD_00864 at 904.213 kb on - strand, within ECD_00864 at 904.318 kb on - strand at 904.586 kb on + strand at 904.707 kb on - strand, within ECD_00865 at 904.779 kb on - strand, within ECD_00865 at 904.928 kb on - strand, within ECD_00865 at 905.172 kb on - strand, within ECD_00865 at 905.450 kb on + strand at 905.650 kb on - strand, within ECD_00866 at 905.679 kb on - strand, within ECD_00866 at 905.679 kb on - strand, within ECD_00866 at 905.679 kb on - strand, within ECD_00866 at 905.679 kb on - strand, within ECD_00866 at 905.679 kb on - strand, within ECD_00866 at 905.686 kb on - strand, within ECD_00866 at 905.743 kb on - strand, within ECD_00866 at 905.743 kb on - strand, within ECD_00866 at 905.743 kb on - strand, within ECD_00866 at 905.908 kb on - strand, within ECD_00866 at 906.086 kb on - strand, within ECD_00866 at 906.229 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 903,558 + ECD_00864 0.30 -1.0 903,559 - ECD_00864 0.30 -1.7 903,572 + ECD_00864 0.31 -1.4 903,886 - ECD_00864 0.59 -0.0 903,929 + ECD_00864 0.63 +1.0 903,929 + ECD_00864 0.63 -1.2 904,213 - ECD_00864 0.88 -0.8 904,318 - -1.8 904,586 + -0.9 904,707 - ECD_00865 0.22 +2.3 904,779 - ECD_00865 0.32 -0.6 904,928 - ECD_00865 0.52 -2.5 905,172 - ECD_00865 0.85 -1.3 905,450 + -0.4 905,650 - ECD_00866 0.12 -2.2 905,679 - ECD_00866 0.16 +0.6 905,679 - ECD_00866 0.16 +1.5 905,679 - ECD_00866 0.16 -0.1 905,679 - ECD_00866 0.16 -0.4 905,679 - ECD_00866 0.16 -0.8 905,686 - ECD_00866 0.17 -0.2 905,743 - ECD_00866 0.26 +1.0 905,743 - ECD_00866 0.26 +0.2 905,743 - ECD_00866 0.26 +0.6 905,908 - ECD_00866 0.51 +0.1 906,086 - ECD_00866 0.77 -0.6 906,229 - -0.4
Or see this region's nucleotide sequence