Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00862 and ECD_00863 are separated by 59 nucleotides ECD_00863 and ECD_00864 are separated by 40 nucleotides ECD_00864 and ECD_00865 are separated by 198 nucleotides
ECD_00862: ECD_00862 - putrescine ABC transporter permease, at 901,788 to 902,633
_00862
ECD_00863: ECD_00863 - DUF2593 family inner membrane protein, at 902,693 to 903,181
_00863
ECD_00864: ECD_00864 - 23S rRNA m(5)U747 methyltransferase, SAM-dependent, at 903,222 to 904,349
_00864
ECD_00865: ECD_00865 - arginine ABC transporter periplasmic binding protein, at 904,548 to 905,279
_00865
Position (kb) 903
904
905 Strain fitness (log2 ratio) -2
-1
0
1
2 at 902.247 kb on + strand, within ECD_00862 at 902.402 kb on + strand, within ECD_00862 at 902.663 kb on + strand at 902.789 kb on - strand, within ECD_00863 at 902.791 kb on + strand, within ECD_00863 at 902.981 kb on + strand, within ECD_00863 at 903.011 kb on + strand, within ECD_00863 at 903.221 kb on + strand at 903.392 kb on + strand, within ECD_00864 at 903.558 kb on + strand, within ECD_00864 at 903.559 kb on - strand, within ECD_00864 at 903.572 kb on + strand, within ECD_00864 at 903.886 kb on - strand, within ECD_00864 at 903.929 kb on + strand, within ECD_00864 at 903.929 kb on + strand, within ECD_00864 at 904.213 kb on - strand, within ECD_00864 at 904.318 kb on - strand at 904.586 kb on + strand at 904.707 kb on - strand, within ECD_00865 at 904.779 kb on - strand, within ECD_00865 at 904.928 kb on - strand, within ECD_00865 at 905.172 kb on - strand, within ECD_00865
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 902,247 + ECD_00862 0.54 +1.8 902,402 + ECD_00862 0.73 -1.3 902,663 + -0.9 902,789 - ECD_00863 0.20 +0.5 902,791 + ECD_00863 0.20 -0.1 902,981 + ECD_00863 0.59 -1.5 903,011 + ECD_00863 0.65 +0.5 903,221 + -0.2 903,392 + ECD_00864 0.15 +0.6 903,558 + ECD_00864 0.30 -1.0 903,559 - ECD_00864 0.30 -1.7 903,572 + ECD_00864 0.31 -1.4 903,886 - ECD_00864 0.59 -0.0 903,929 + ECD_00864 0.63 +1.0 903,929 + ECD_00864 0.63 -1.2 904,213 - ECD_00864 0.88 -0.8 904,318 - -1.8 904,586 + -0.9 904,707 - ECD_00865 0.22 +2.3 904,779 - ECD_00865 0.32 -0.6 904,928 - ECD_00865 0.52 -2.5 905,172 - ECD_00865 0.85 -1.3
Or see this region's nucleotide sequence