Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00772 and ECD_00773 are separated by 264 nucleotides ECD_00773 and ECD_00774 are separated by 275 nucleotides ECD_00774 and ECD_00775 overlap by 4 nucleotides
ECD_00772: ECD_00772 - catecholate siderophore receptor, at 823,241 to 825,523
_00772
ECD_00773: ECD_00773 - colanic acid mucoidy stimulation protein, at 825,788 to 826,048
_00773
ECD_00774: ECD_00774 - 23S rRNA m(6)A1618 methyltransferase, SAM-dependent, at 826,324 to 827,250
_00774
ECD_00775: ECD_00775 - mechanosensitive channel protein, intermediate conductance, at 827,247 to 829,472
_00775
Position (kb) 826
827
828 Strain fitness (log2 ratio) -2
-1
0
1 at 825.410 kb on - strand at 825.458 kb on - strand at 825.546 kb on - strand at 825.705 kb on - strand at 825.987 kb on + strand, within ECD_00773 at 826.029 kb on - strand at 826.067 kb on - strand at 826.220 kb on + strand at 826.269 kb on - strand at 826.323 kb on + strand at 826.672 kb on - strand, within ECD_00774 at 826.699 kb on + strand, within ECD_00774 at 827.102 kb on + strand, within ECD_00774 at 827.248 kb on + strand at 827.315 kb on - strand at 827.656 kb on + strand, within ECD_00775 at 827.677 kb on - strand, within ECD_00775 at 827.790 kb on - strand, within ECD_00775 at 827.832 kb on + strand, within ECD_00775 at 827.943 kb on - strand, within ECD_00775 at 828.242 kb on + strand, within ECD_00775 at 828.243 kb on - strand, within ECD_00775 at 828.243 kb on - strand, within ECD_00775
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 825,410 - -1.6 825,458 - +1.5 825,546 - -0.1 825,705 - -1.9 825,987 + ECD_00773 0.76 +1.0 826,029 - -0.2 826,067 - -0.5 826,220 + -0.8 826,269 - -0.8 826,323 + -0.3 826,672 - ECD_00774 0.38 +0.3 826,699 + ECD_00774 0.40 +0.5 827,102 + ECD_00774 0.84 +1.2 827,248 + +1.0 827,315 - +0.2 827,656 + ECD_00775 0.18 +0.1 827,677 - ECD_00775 0.19 +0.4 827,790 - ECD_00775 0.24 -0.4 827,832 + ECD_00775 0.26 -1.7 827,943 - ECD_00775 0.31 +1.2 828,242 + ECD_00775 0.45 -1.9 828,243 - ECD_00775 0.45 -0.9 828,243 - ECD_00775 0.45 +0.4
Or see this region's nucleotide sequence