Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00769 and ECD_00770 are separated by 264 nucleotides ECD_00770 and ECD_00771 are separated by 73 nucleotides ECD_00771 and ECD_00772 are separated by 41 nucleotides
ECD_00769: ECD_00769 - DUF1471 family putative periplasmic protein, at 821,657 to 821,917
_00769
ECD_00770: ECD_00770 - DksA-type zinc finger protein, at 822,182 to 822,448
_00770
ECD_00771: ECD_00771 - Fe(II)-dependent oxygenase superfamily protein, at 822,522 to 823,199
_00771
ECD_00772: ECD_00772 - catecholate siderophore receptor, at 823,241 to 825,523
_00772
Position (kb) 822
823
824 Strain fitness (log2 ratio) -2
-1
0
1 at 821.544 kb on + strand at 821.544 kb on + strand at 821.545 kb on - strand at 821.664 kb on + strand at 821.718 kb on + strand, within ECD_00769 at 822.468 kb on + strand at 822.469 kb on - strand at 822.469 kb on - strand at 822.469 kb on - strand at 822.475 kb on - strand at 822.486 kb on + strand at 822.486 kb on + strand at 822.564 kb on - strand at 822.618 kb on - strand, within ECD_00771 at 822.628 kb on - strand, within ECD_00771 at 822.684 kb on - strand, within ECD_00771 at 822.745 kb on + strand, within ECD_00771 at 822.746 kb on - strand, within ECD_00771 at 822.823 kb on + strand, within ECD_00771 at 822.824 kb on - strand, within ECD_00771 at 822.993 kb on + strand, within ECD_00771 at 823.045 kb on - strand, within ECD_00771 at 823.192 kb on + strand at 823.193 kb on - strand at 823.200 kb on - strand at 823.293 kb on + strand at 823.378 kb on + strand at 823.530 kb on - strand, within ECD_00772 at 823.622 kb on - strand, within ECD_00772 at 823.677 kb on + strand, within ECD_00772 at 823.702 kb on - strand, within ECD_00772 at 823.926 kb on + strand, within ECD_00772 at 823.930 kb on + strand, within ECD_00772 at 823.930 kb on + strand, within ECD_00772 at 823.930 kb on + strand, within ECD_00772 at 823.931 kb on - strand, within ECD_00772 at 823.931 kb on - strand, within ECD_00772 at 823.933 kb on + strand, within ECD_00772 at 823.934 kb on - strand, within ECD_00772 at 823.935 kb on + strand, within ECD_00772 at 824.113 kb on - strand, within ECD_00772
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 821,544 + -1.2 821,544 + -1.5 821,545 - -1.2 821,664 + -1.1 821,718 + ECD_00769 0.23 -1.8 822,468 + +1.0 822,469 - -0.6 822,469 - +0.1 822,469 - +1.0 822,475 - -1.1 822,486 + -0.7 822,486 + -2.0 822,564 - -1.1 822,618 - ECD_00771 0.14 -1.3 822,628 - ECD_00771 0.16 -0.7 822,684 - ECD_00771 0.24 -2.2 822,745 + ECD_00771 0.33 +0.7 822,746 - ECD_00771 0.33 +0.2 822,823 + ECD_00771 0.44 +0.5 822,824 - ECD_00771 0.45 +1.4 822,993 + ECD_00771 0.69 +0.9 823,045 - ECD_00771 0.77 -1.7 823,192 + +0.1 823,193 - -2.4 823,200 - -0.8 823,293 + +0.6 823,378 + -2.4 823,530 - ECD_00772 0.13 +0.3 823,622 - ECD_00772 0.17 -0.9 823,677 + ECD_00772 0.19 -1.2 823,702 - ECD_00772 0.20 +0.2 823,926 + ECD_00772 0.30 +1.6 823,930 + ECD_00772 0.30 -0.0 823,930 + ECD_00772 0.30 -0.5 823,930 + ECD_00772 0.30 -0.2 823,931 - ECD_00772 0.30 -0.3 823,931 - ECD_00772 0.30 -2.5 823,933 + ECD_00772 0.30 +0.3 823,934 - ECD_00772 0.30 -2.0 823,935 + ECD_00772 0.30 -0.2 824,113 - ECD_00772 0.38 -0.8
Or see this region's nucleotide sequence