Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00746 and ECD_00747 are separated by 191 nucleotides ECD_00747 and ECD_00748 are separated by 396 nucleotides
ECD_00746: ECD_00746 - exision nuclease of nucleotide excision repair, DNA damage recognition component, at 797,519 to 799,540
_00746
ECD_00747: ECD_00747 - putative CofD superfamily transferase, at 799,732 to 800,640
_00747
ECD_00748: ECD_00748 - molybdopterin biosynthesis protein A, at 801,037 to 802,026
_00748
Position (kb) 799
800
801 Strain fitness (log2 ratio) -2
-1
0
1
2 at 798.941 kb on + strand, within ECD_00746 at 798.955 kb on + strand, within ECD_00746 at 799.032 kb on + strand, within ECD_00746 at 799.151 kb on - strand, within ECD_00746 at 799.595 kb on + strand at 799.596 kb on - strand at 799.767 kb on + strand at 799.905 kb on - strand, within ECD_00747 at 799.905 kb on - strand, within ECD_00747 at 799.985 kb on + strand, within ECD_00747 at 799.986 kb on - strand, within ECD_00747 at 800.060 kb on + strand, within ECD_00747 at 800.149 kb on + strand, within ECD_00747 at 800.149 kb on + strand, within ECD_00747 at 800.149 kb on + strand, within ECD_00747 at 800.284 kb on - strand, within ECD_00747 at 800.320 kb on - strand, within ECD_00747 at 800.512 kb on - strand, within ECD_00747 at 800.763 kb on - strand at 800.780 kb on + strand at 800.781 kb on - strand at 800.853 kb on + strand at 800.922 kb on + strand at 800.922 kb on + strand at 801.034 kb on + strand at 801.034 kb on + strand at 801.034 kb on + strand at 801.034 kb on + strand at 801.035 kb on - strand at 801.070 kb on - strand at 801.079 kb on + strand at 801.109 kb on - strand at 801.124 kb on + strand at 801.343 kb on + strand, within ECD_00748 at 801.388 kb on - strand, within ECD_00748 at 801.388 kb on - strand, within ECD_00748 at 801.412 kb on - strand, within ECD_00748 at 801.439 kb on - strand, within ECD_00748
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 798,941 + ECD_00746 0.70 -0.3 798,955 + ECD_00746 0.71 +1.1 799,032 + ECD_00746 0.75 +1.0 799,151 - ECD_00746 0.81 -1.0 799,595 + +1.1 799,596 - -1.3 799,767 + +0.4 799,905 - ECD_00747 0.19 -1.1 799,905 - ECD_00747 0.19 -0.0 799,985 + ECD_00747 0.28 -0.1 799,986 - ECD_00747 0.28 +1.1 800,060 + ECD_00747 0.36 -1.6 800,149 + ECD_00747 0.46 -1.6 800,149 + ECD_00747 0.46 +1.8 800,149 + ECD_00747 0.46 -1.8 800,284 - ECD_00747 0.61 +0.5 800,320 - ECD_00747 0.65 -0.6 800,512 - ECD_00747 0.86 -0.2 800,763 - -0.9 800,780 + -2.1 800,781 - +0.7 800,853 + +0.1 800,922 + +0.7 800,922 + +0.9 801,034 + +0.1 801,034 + -0.1 801,034 + +0.2 801,034 + +0.5 801,035 - +0.0 801,070 - -0.2 801,079 + +1.3 801,109 - -0.6 801,124 + -1.9 801,343 + ECD_00748 0.31 -0.1 801,388 - ECD_00748 0.35 +1.1 801,388 - ECD_00748 0.35 +0.1 801,412 - ECD_00748 0.38 -1.8 801,439 - ECD_00748 0.41 +0.1
Or see this region's nucleotide sequence