Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00703 and ECD_00704 are separated by 37 nucleotides ECD_00704 and ECD_00705 overlap by 4 nucleotides
ECD_00703: ECD_00703 - quinolinate synthase, subunit A, at 740,493 to 741,536
_00703
ECD_00704: ECD_00704 - nicotinamide riboside transporter, at 741,574 to 742,293
_00704
ECD_00705: ECD_00705 - zinc efflux system, at 742,290 to 743,231
_00705
Position (kb) 741
742
743 Strain fitness (log2 ratio) -2
-1
0
1
2 at 740.613 kb on - strand, within ECD_00703 at 741.073 kb on + strand, within ECD_00703 at 741.073 kb on + strand, within ECD_00703 at 741.073 kb on + strand, within ECD_00703 at 741.073 kb on + strand, within ECD_00703 at 741.074 kb on - strand, within ECD_00703 at 741.188 kb on + strand, within ECD_00703 at 741.266 kb on + strand, within ECD_00703 at 741.503 kb on + strand at 741.605 kb on + strand at 741.605 kb on + strand at 741.609 kb on + strand at 741.610 kb on - strand at 741.611 kb on + strand at 741.611 kb on + strand at 742.007 kb on + strand, within ECD_00704 at 742.013 kb on + strand, within ECD_00704 at 742.221 kb on + strand, within ECD_00704 at 742.500 kb on + strand, within ECD_00705 at 742.501 kb on - strand, within ECD_00705 at 742.501 kb on - strand, within ECD_00705 at 742.501 kb on - strand, within ECD_00705 at 742.501 kb on - strand, within ECD_00705 at 742.501 kb on - strand, within ECD_00705 at 742.501 kb on - strand, within ECD_00705 at 742.501 kb on - strand, within ECD_00705 at 742.501 kb on - strand, within ECD_00705 at 742.501 kb on - strand, within ECD_00705 at 742.501 kb on - strand, within ECD_00705 at 742.506 kb on + strand, within ECD_00705 at 742.506 kb on + strand, within ECD_00705 at 742.507 kb on - strand, within ECD_00705 at 742.507 kb on - strand, within ECD_00705 at 742.507 kb on - strand, within ECD_00705 at 742.507 kb on - strand, within ECD_00705 at 742.507 kb on - strand, within ECD_00705 at 742.547 kb on + strand, within ECD_00705 at 742.704 kb on - strand, within ECD_00705 at 742.774 kb on - strand, within ECD_00705 at 742.825 kb on - strand, within ECD_00705 at 742.933 kb on - strand, within ECD_00705 at 742.933 kb on - strand, within ECD_00705 at 742.944 kb on + strand, within ECD_00705 at 743.073 kb on - strand, within ECD_00705 at 743.186 kb on + strand at 743.260 kb on + strand at 743.261 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 740,613 - ECD_00703 0.11 -1.7 741,073 + ECD_00703 0.56 -0.9 741,073 + ECD_00703 0.56 +0.4 741,073 + ECD_00703 0.56 -1.6 741,073 + ECD_00703 0.56 -0.4 741,074 - ECD_00703 0.56 +1.8 741,188 + ECD_00703 0.67 -0.4 741,266 + ECD_00703 0.74 -0.1 741,503 + -0.6 741,605 + +0.1 741,605 + -1.3 741,609 + -1.6 741,610 - -1.7 741,611 + -1.6 741,611 + +1.7 742,007 + ECD_00704 0.60 -2.2 742,013 + ECD_00704 0.61 +0.9 742,221 + ECD_00704 0.90 -0.6 742,500 + ECD_00705 0.22 +1.1 742,501 - ECD_00705 0.22 +1.0 742,501 - ECD_00705 0.22 +0.1 742,501 - ECD_00705 0.22 -1.5 742,501 - ECD_00705 0.22 +0.2 742,501 - ECD_00705 0.22 -2.6 742,501 - ECD_00705 0.22 -2.1 742,501 - ECD_00705 0.22 +0.1 742,501 - ECD_00705 0.22 -0.6 742,501 - ECD_00705 0.22 -1.5 742,501 - ECD_00705 0.22 -0.4 742,506 + ECD_00705 0.23 -2.1 742,506 + ECD_00705 0.23 +0.9 742,507 - ECD_00705 0.23 -0.3 742,507 - ECD_00705 0.23 +0.3 742,507 - ECD_00705 0.23 -0.7 742,507 - ECD_00705 0.23 -1.5 742,507 - ECD_00705 0.23 -0.3 742,547 + ECD_00705 0.27 -1.3 742,704 - ECD_00705 0.44 -0.6 742,774 - ECD_00705 0.51 -0.8 742,825 - ECD_00705 0.57 -1.9 742,933 - ECD_00705 0.68 -0.5 742,933 - ECD_00705 0.68 -0.1 742,944 + ECD_00705 0.69 -1.5 743,073 - ECD_00705 0.83 -1.4 743,186 + -0.4 743,260 + +1.2 743,261 - +1.4
Or see this region's nucleotide sequence