Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00637 and ECD_00638 are separated by 576 nucleotides ECD_00638 and ECD_00639 are separated by 49 nucleotides ECD_00639 and ECD_00640 are separated by 83 nucleotides
ECD_00637: ECD_00637 - glutamyl-tRNA synthetase, at 665,967 to 667,631
_00637
ECD_00638: ECD_00638 - chitoporin, at 668,208 to 669,614
_00638
ECD_00639: ECD_00639 - chitosugar-induced verified lipoprotein, at 669,664 to 669,990
_00639
ECD_00640: ECD_00640 - ferric iron uptake regulon transcriptional repressor; autorepressor, at 670,074 to 670,520
_00640
Position (kb) 668
669
670 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 668.213 kb on + strand at 668.231 kb on + strand at 668.342 kb on - strand at 668.342 kb on - strand at 668.344 kb on - strand at 668.344 kb on - strand at 668.558 kb on + strand, within ECD_00638 at 668.599 kb on + strand, within ECD_00638 at 668.599 kb on + strand, within ECD_00638 at 668.600 kb on - strand, within ECD_00638 at 668.658 kb on + strand, within ECD_00638 at 668.719 kb on - strand, within ECD_00638 at 668.782 kb on - strand, within ECD_00638 at 669.188 kb on + strand, within ECD_00638 at 669.295 kb on - strand, within ECD_00638 at 669.342 kb on + strand, within ECD_00638 at 669.363 kb on - strand, within ECD_00638 at 669.450 kb on + strand, within ECD_00638 at 669.708 kb on - strand, within ECD_00639 at 669.979 kb on - strand at 670.076 kb on - strand at 670.293 kb on - strand, within ECD_00640
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 668,213 + -0.4 668,231 + -1.6 668,342 - -0.4 668,342 - -1.1 668,344 - -1.9 668,344 - -1.3 668,558 + ECD_00638 0.25 +0.6 668,599 + ECD_00638 0.28 +0.0 668,599 + ECD_00638 0.28 +0.1 668,600 - ECD_00638 0.28 -1.0 668,658 + ECD_00638 0.32 -3.4 668,719 - ECD_00638 0.36 +1.2 668,782 - ECD_00638 0.41 -0.4 669,188 + ECD_00638 0.70 -1.0 669,295 - ECD_00638 0.77 -1.8 669,342 + ECD_00638 0.81 -2.0 669,363 - ECD_00638 0.82 +1.0 669,450 + ECD_00638 0.88 -0.7 669,708 - ECD_00639 0.13 -1.1 669,979 - +1.6 670,076 - +1.3 670,293 - ECD_00640 0.49 +1.6
Or see this region's nucleotide sequence