Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00559 and ECD_00560 are separated by 374 nucleotides ECD_00560 and ECD_00561 are separated by 9 nucleotides
ECD_00559: ECD_00559 - ferrienterobactin ABC transporter periplasmic binding protein, at 584,041 to 584,997
_00559
ECD_00560: ECD_00560 - isochorismate synthase 1, at 585,372 to 586,547
_00560
ECD_00561: ECD_00561 - 2,3-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex, at 586,557 to 588,167
_00561
Position (kb) 585
586
587 Strain fitness (log2 ratio) -2
-1
0
1
2 at 584.402 kb on + strand, within ECD_00559 at 584.559 kb on - strand, within ECD_00559 at 584.693 kb on + strand, within ECD_00559 at 584.694 kb on - strand, within ECD_00559 at 584.853 kb on + strand, within ECD_00559 at 584.878 kb on - strand, within ECD_00559 at 584.963 kb on - strand at 585.017 kb on - strand at 585.289 kb on - strand at 585.377 kb on + strand at 585.377 kb on + strand at 585.378 kb on - strand at 585.440 kb on + strand at 585.636 kb on + strand, within ECD_00560 at 585.636 kb on + strand, within ECD_00560 at 585.636 kb on + strand, within ECD_00560 at 585.636 kb on + strand, within ECD_00560 at 585.637 kb on - strand, within ECD_00560 at 585.637 kb on - strand, within ECD_00560 at 585.637 kb on - strand, within ECD_00560 at 585.639 kb on - strand, within ECD_00560 at 585.789 kb on - strand, within ECD_00560 at 585.971 kb on - strand, within ECD_00560 at 586.151 kb on - strand, within ECD_00560 at 586.179 kb on - strand, within ECD_00560 at 586.221 kb on - strand, within ECD_00560 at 586.517 kb on + strand at 586.745 kb on + strand, within ECD_00561 at 586.789 kb on + strand, within ECD_00561 at 586.790 kb on - strand, within ECD_00561 at 586.816 kb on - strand, within ECD_00561 at 586.817 kb on + strand, within ECD_00561 at 587.175 kb on + strand, within ECD_00561 at 587.176 kb on - strand, within ECD_00561 at 587.178 kb on + strand, within ECD_00561 at 587.179 kb on - strand, within ECD_00561 at 587.181 kb on + strand, within ECD_00561 at 587.182 kb on - strand, within ECD_00561 at 587.182 kb on - strand, within ECD_00561 at 587.195 kb on + strand, within ECD_00561 at 587.259 kb on - strand, within ECD_00561 at 587.262 kb on + strand, within ECD_00561 at 587.262 kb on + strand, within ECD_00561 at 587.263 kb on - strand, within ECD_00561 at 587.263 kb on - strand, within ECD_00561 at 587.263 kb on - strand, within ECD_00561 at 587.471 kb on - strand, within ECD_00561
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 584,402 + ECD_00559 0.38 -1.6 584,559 - ECD_00559 0.54 -0.6 584,693 + ECD_00559 0.68 +0.5 584,694 - ECD_00559 0.68 -2.2 584,853 + ECD_00559 0.85 -1.2 584,878 - ECD_00559 0.87 +1.0 584,963 - -1.2 585,017 - -0.3 585,289 - +1.7 585,377 + -0.3 585,377 + -0.4 585,378 - -0.4 585,440 + -1.2 585,636 + ECD_00560 0.22 +1.0 585,636 + ECD_00560 0.22 -1.3 585,636 + ECD_00560 0.22 -0.1 585,636 + ECD_00560 0.22 +1.3 585,637 - ECD_00560 0.23 +0.9 585,637 - ECD_00560 0.23 -1.9 585,637 - ECD_00560 0.23 -0.3 585,639 - ECD_00560 0.23 +0.7 585,789 - ECD_00560 0.35 +0.2 585,971 - ECD_00560 0.51 -0.5 586,151 - ECD_00560 0.66 -1.0 586,179 - ECD_00560 0.69 +0.5 586,221 - ECD_00560 0.72 +0.3 586,517 + -1.0 586,745 + ECD_00561 0.12 +1.1 586,789 + ECD_00561 0.14 -0.2 586,790 - ECD_00561 0.14 -2.1 586,816 - ECD_00561 0.16 +0.9 586,817 + ECD_00561 0.16 +0.0 587,175 + ECD_00561 0.38 +1.8 587,176 - ECD_00561 0.38 -0.5 587,178 + ECD_00561 0.39 +0.6 587,179 - ECD_00561 0.39 -0.7 587,181 + ECD_00561 0.39 -0.4 587,182 - ECD_00561 0.39 +0.4 587,182 - ECD_00561 0.39 -1.2 587,195 + ECD_00561 0.40 -2.6 587,259 - ECD_00561 0.44 +0.4 587,262 + ECD_00561 0.44 -0.0 587,262 + ECD_00561 0.44 -0.6 587,263 - ECD_00561 0.44 -0.9 587,263 - ECD_00561 0.44 +0.9 587,263 - ECD_00561 0.44 +1.2 587,471 - ECD_00561 0.57 -1.3
Or see this region's nucleotide sequence