Strain Fitness in Escherichia coli BL21 around ECD_00465

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00464 and ECD_00465 are separated by 227 nucleotidesECD_00465 and ECD_00466 are separated by 10 nucleotides ECD_00464: ECD_00464 - glycerate kinase II, at 511,033 to 512,178 _00464 ECD_00465: ECD_00465 - S-ureidoglycine aminohydrolase, at 512,406 to 513,191 _00465 ECD_00466: ECD_00466 - allantoate amidohydrolase, at 513,202 to 514,437 _00466 Position (kb) 512 513 514Strain fitness (log2 ratio) -3 -2 -1 0 1at 511.417 kb on - strand, within ECD_00464at 511.530 kb on + strand, within ECD_00464at 511.717 kb on + strand, within ECD_00464at 511.827 kb on + strand, within ECD_00464at 512.375 kb on + strandat 512.376 kb on - strandat 512.578 kb on + strand, within ECD_00465at 512.708 kb on + strand, within ECD_00465at 512.716 kb on + strand, within ECD_00465at 512.776 kb on - strand, within ECD_00465at 512.795 kb on + strand, within ECD_00465at 512.796 kb on - strand, within ECD_00465at 512.797 kb on + strand, within ECD_00465at 512.919 kb on - strand, within ECD_00465at 512.936 kb on - strand, within ECD_00465at 513.150 kb on + strandat 513.181 kb on - strandat 513.490 kb on - strand, within ECD_00466at 513.571 kb on - strand, within ECD_00466at 513.790 kb on - strand, within ECD_00466at 513.790 kb on - strand, within ECD_00466at 513.889 kb on - strand, within ECD_00466at 514.041 kb on - strand, within ECD_00466at 514.090 kb on - strand, within ECD_00466at 514.090 kb on - strand, within ECD_00466

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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511,417 - ECD_00464 0.34 -3.1
511,530 + ECD_00464 0.43 -0.3
511,717 + ECD_00464 0.60 -1.4
511,827 + ECD_00464 0.69 -0.7
512,375 + +1.1
512,376 - -0.7
512,578 + ECD_00465 0.22 +0.0
512,708 + ECD_00465 0.38 -1.1
512,716 + ECD_00465 0.39 -1.2
512,776 - ECD_00465 0.47 -1.8
512,795 + ECD_00465 0.49 +0.0
512,796 - ECD_00465 0.50 +0.6
512,797 + ECD_00465 0.50 -1.6
512,919 - ECD_00465 0.65 -0.9
512,936 - ECD_00465 0.67 -0.1
513,150 + +0.1
513,181 - -0.8
513,490 - ECD_00466 0.23 -1.1
513,571 - ECD_00466 0.30 +0.2
513,790 - ECD_00466 0.48 -0.6
513,790 - ECD_00466 0.48 +0.2
513,889 - ECD_00466 0.56 +0.2
514,041 - ECD_00466 0.68 -0.7
514,090 - ECD_00466 0.72 +0.5
514,090 - ECD_00466 0.72 +0.4

Or see this region's nucleotide sequence