Strain Fitness in Escherichia coli BL21 around ECD_00424

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00422 and ECD_00423 overlap by 1 nucleotidesECD_00423 and ECD_00424 are separated by 109 nucleotidesECD_00424 and ECD_00425 are separated by 180 nucleotides ECD_00422: ECD_00422 - DNA-binding protein, putative nucleoid-associated protein, at 463,122 to 463,451 _00422 ECD_00423: ECD_00423 - gap repair protein, at 463,451 to 464,056 _00423 ECD_00424: ECD_00424 - protein refolding molecular co-chaperone Hsp90, Hsp70-dependent; heat-shock protein; ATPase, at 464,166 to 466,040 _00424 ECD_00425: ECD_00425 - adenylate kinase, at 466,221 to 466,865 _00425 Position (kb) 464 465 466 467Strain fitness (log2 ratio) -2 -1 0 1at 463.480 kb on + strandat 463.727 kb on + strand, within ECD_00423at 463.763 kb on + strand, within ECD_00423at 463.916 kb on + strand, within ECD_00423at 463.916 kb on + strand, within ECD_00423at 463.916 kb on + strand, within ECD_00423at 463.916 kb on + strand, within ECD_00423at 463.916 kb on + strand, within ECD_00423at 463.917 kb on - strand, within ECD_00423at 463.941 kb on - strand, within ECD_00423at 464.042 kb on - strandat 464.094 kb on + strandat 464.095 kb on - strandat 464.150 kb on - strandat 464.158 kb on - strandat 464.164 kb on - strandat 464.164 kb on - strandat 464.164 kb on - strandat 464.164 kb on - strandat 464.270 kb on + strandat 464.270 kb on + strandat 464.271 kb on - strandat 464.271 kb on - strandat 464.276 kb on + strandat 464.649 kb on + strand, within ECD_00424at 464.649 kb on + strand, within ECD_00424at 464.649 kb on + strand, within ECD_00424at 464.649 kb on + strand, within ECD_00424at 464.649 kb on + strand, within ECD_00424at 464.763 kb on + strand, within ECD_00424at 464.987 kb on + strand, within ECD_00424at 464.987 kb on + strand, within ECD_00424at 464.988 kb on - strand, within ECD_00424at 465.000 kb on + strand, within ECD_00424at 465.000 kb on + strand, within ECD_00424at 465.044 kb on + strand, within ECD_00424at 465.044 kb on + strand, within ECD_00424at 465.063 kb on + strand, within ECD_00424at 465.063 kb on + strand, within ECD_00424at 465.063 kb on + strand, within ECD_00424at 465.114 kb on + strand, within ECD_00424at 465.114 kb on + strand, within ECD_00424at 465.115 kb on - strand, within ECD_00424at 465.377 kb on + strand, within ECD_00424at 465.377 kb on + strand, within ECD_00424at 465.378 kb on - strand, within ECD_00424at 465.459 kb on + strand, within ECD_00424at 465.459 kb on + strand, within ECD_00424at 465.459 kb on + strand, within ECD_00424at 465.477 kb on + strand, within ECD_00424at 465.477 kb on + strand, within ECD_00424at 465.477 kb on + strand, within ECD_00424at 465.576 kb on + strand, within ECD_00424at 465.576 kb on + strand, within ECD_00424at 465.576 kb on + strand, within ECD_00424at 465.577 kb on - strand, within ECD_00424at 465.596 kb on + strand, within ECD_00424at 465.861 kb on + strandat 465.862 kb on - strandat 465.911 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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463,480 + -0.0
463,727 + ECD_00423 0.46 -1.2
463,763 + ECD_00423 0.51 -0.5
463,916 + ECD_00423 0.77 -0.2
463,916 + ECD_00423 0.77 +0.0
463,916 + ECD_00423 0.77 -1.5
463,916 + ECD_00423 0.77 -0.9
463,916 + ECD_00423 0.77 -1.7
463,917 - ECD_00423 0.77 -0.6
463,941 - ECD_00423 0.81 -0.3
464,042 - -0.7
464,094 + -0.1
464,095 - -0.4
464,150 - +0.2
464,158 - -1.0
464,164 - +0.8
464,164 - -0.7
464,164 - +0.2
464,164 - -2.5
464,270 + -0.7
464,270 + +0.4
464,271 - -1.2
464,271 - -0.3
464,276 + -0.1
464,649 + ECD_00424 0.26 -0.2
464,649 + ECD_00424 0.26 -0.4
464,649 + ECD_00424 0.26 +1.7
464,649 + ECD_00424 0.26 +0.4
464,649 + ECD_00424 0.26 +0.4
464,763 + ECD_00424 0.32 +1.4
464,987 + ECD_00424 0.44 -2.0
464,987 + ECD_00424 0.44 +0.4
464,988 - ECD_00424 0.44 -1.6
465,000 + ECD_00424 0.44 +0.4
465,000 + ECD_00424 0.44 +0.6
465,044 + ECD_00424 0.47 +0.9
465,044 + ECD_00424 0.47 +1.1
465,063 + ECD_00424 0.48 +0.5
465,063 + ECD_00424 0.48 +0.2
465,063 + ECD_00424 0.48 +0.7
465,114 + ECD_00424 0.51 +0.6
465,114 + ECD_00424 0.51 +1.0
465,115 - ECD_00424 0.51 -0.7
465,377 + ECD_00424 0.65 +0.7
465,377 + ECD_00424 0.65 +0.3
465,378 - ECD_00424 0.65 -1.3
465,459 + ECD_00424 0.69 +0.4
465,459 + ECD_00424 0.69 -0.7
465,459 + ECD_00424 0.69 +0.0
465,477 + ECD_00424 0.70 +1.2
465,477 + ECD_00424 0.70 +0.2
465,477 + ECD_00424 0.70 +1.7
465,576 + ECD_00424 0.75 +0.0
465,576 + ECD_00424 0.75 +1.6
465,576 + ECD_00424 0.75 +1.1
465,577 - ECD_00424 0.75 -0.8
465,596 + ECD_00424 0.76 +0.9
465,861 + +0.6
465,862 - -0.5
465,911 + +1.2

Or see this region's nucleotide sequence