Strain Fitness in Escherichia coli BL21 around ECD_00413

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00411 and ECD_00412 are separated by 25 nucleotidesECD_00412 and ECD_00413 are separated by 545 nucleotidesECD_00413 and ECD_00414 are separated by 22 nucleotides ECD_00411: ECD_00411 - modulator of gene expression, with H-NS, at 449,136 to 449,354 _00411 ECD_00412: ECD_00412 - Hha toxicity attenuator; conjugation-related protein, at 449,380 to 449,754 _00412 ECD_00413: ECD_00413 - multidrug efflux system protein, at 450,300 to 453,449 _00413 ECD_00414: ECD_00414 - multidrug efflux system, at 453,472 to 454,665 _00414 Position (kb) 450 451 452 453 454Strain fitness (log2 ratio) -2 -1 0 1at 449.365 kb on - strandat 449.376 kb on - strandat 449.476 kb on - strand, within ECD_00412at 449.476 kb on - strand, within ECD_00412at 449.690 kb on + strand, within ECD_00412at 449.713 kb on - strand, within ECD_00412at 449.813 kb on - strandat 449.847 kb on - strandat 450.022 kb on + strandat 450.282 kb on + strandat 450.298 kb on + strandat 450.318 kb on - strandat 450.318 kb on - strandat 450.403 kb on - strandat 450.438 kb on - strandat 450.442 kb on - strandat 450.442 kb on - strandat 450.535 kb on - strandat 450.579 kb on - strandat 450.674 kb on - strand, within ECD_00413at 450.881 kb on - strand, within ECD_00413at 451.019 kb on - strand, within ECD_00413at 451.081 kb on + strand, within ECD_00413at 451.110 kb on - strand, within ECD_00413at 451.136 kb on - strand, within ECD_00413at 451.268 kb on + strand, within ECD_00413at 451.302 kb on + strand, within ECD_00413at 451.316 kb on + strand, within ECD_00413at 451.317 kb on - strand, within ECD_00413at 451.317 kb on - strand, within ECD_00413at 451.317 kb on - strand, within ECD_00413at 451.317 kb on - strand, within ECD_00413at 451.317 kb on - strand, within ECD_00413at 451.657 kb on + strand, within ECD_00413at 451.658 kb on - strand, within ECD_00413at 451.661 kb on - strand, within ECD_00413at 451.661 kb on - strand, within ECD_00413at 451.692 kb on - strand, within ECD_00413at 451.790 kb on - strand, within ECD_00413at 451.858 kb on - strand, within ECD_00413at 452.033 kb on + strand, within ECD_00413at 452.037 kb on - strand, within ECD_00413at 452.050 kb on + strand, within ECD_00413at 452.054 kb on + strand, within ECD_00413at 452.064 kb on - strand, within ECD_00413at 452.064 kb on - strand, within ECD_00413at 452.064 kb on - strand, within ECD_00413at 452.383 kb on + strand, within ECD_00413at 452.384 kb on - strand, within ECD_00413at 452.384 kb on - strand, within ECD_00413at 452.388 kb on - strand, within ECD_00413at 452.388 kb on - strand, within ECD_00413at 452.627 kb on - strand, within ECD_00413at 452.748 kb on - strand, within ECD_00413at 452.905 kb on + strand, within ECD_00413at 452.981 kb on - strand, within ECD_00413at 453.159 kb on - strandat 453.221 kb on - strandat 453.221 kb on - strandat 453.221 kb on - strandat 453.221 kb on - strandat 453.221 kb on - strandat 453.221 kb on - strandat 453.221 kb on - strandat 453.221 kb on - strandat 453.246 kb on - strandat 453.342 kb on - strandat 453.455 kb on - strandat 453.468 kb on + strandat 453.474 kb on - strandat 453.474 kb on - strandat 453.584 kb on - strandat 453.584 kb on - strandat 453.584 kb on - strandat 453.584 kb on - strandat 453.584 kb on - strandat 453.692 kb on - strand, within ECD_00414at 453.847 kb on - strand, within ECD_00414at 454.028 kb on + strand, within ECD_00414at 454.028 kb on + strand, within ECD_00414at 454.029 kb on - strand, within ECD_00414at 454.082 kb on - strand, within ECD_00414at 454.082 kb on - strand, within ECD_00414at 454.111 kb on - strand, within ECD_00414at 454.111 kb on - strand, within ECD_00414at 454.148 kb on + strand, within ECD_00414at 454.239 kb on - strand, within ECD_00414at 454.239 kb on - strand, within ECD_00414at 454.239 kb on - strand, within ECD_00414at 454.256 kb on + strand, within ECD_00414at 454.352 kb on + strand, within ECD_00414at 454.353 kb on - strand, within ECD_00414at 454.353 kb on - strand, within ECD_00414at 454.353 kb on - strand, within ECD_00414at 454.365 kb on - strand, within ECD_00414at 454.365 kb on - strand, within ECD_00414

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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449,365 - +0.7
449,376 - +0.3
449,476 - ECD_00412 0.26 +0.6
449,476 - ECD_00412 0.26 +0.1
449,690 + ECD_00412 0.83 -1.9
449,713 - ECD_00412 0.89 -1.1
449,813 - -0.3
449,847 - -0.2
450,022 + -0.4
450,282 + -2.1
450,298 + +0.3
450,318 - -0.7
450,318 - -0.8
450,403 - -1.0
450,438 - -0.0
450,442 - +1.0
450,442 - +0.3
450,535 - -0.3
450,579 - -0.0
450,674 - ECD_00413 0.12 +0.2
450,881 - ECD_00413 0.18 +0.1
451,019 - ECD_00413 0.23 -0.1
451,081 + ECD_00413 0.25 -2.1
451,110 - ECD_00413 0.26 +0.0
451,136 - ECD_00413 0.27 +0.3
451,268 + ECD_00413 0.31 -0.7
451,302 + ECD_00413 0.32 -1.9
451,316 + ECD_00413 0.32 -2.3
451,317 - ECD_00413 0.32 +0.6
451,317 - ECD_00413 0.32 +1.1
451,317 - ECD_00413 0.32 +0.7
451,317 - ECD_00413 0.32 -0.3
451,317 - ECD_00413 0.32 +0.1
451,657 + ECD_00413 0.43 -0.4
451,658 - ECD_00413 0.43 +0.6
451,661 - ECD_00413 0.43 -0.2
451,661 - ECD_00413 0.43 -0.8
451,692 - ECD_00413 0.44 -0.2
451,790 - ECD_00413 0.47 +1.2
451,858 - ECD_00413 0.49 +1.6
452,033 + ECD_00413 0.55 -1.6
452,037 - ECD_00413 0.55 -0.5
452,050 + ECD_00413 0.56 -2.7
452,054 + ECD_00413 0.56 -1.6
452,064 - ECD_00413 0.56 -1.5
452,064 - ECD_00413 0.56 -0.3
452,064 - ECD_00413 0.56 +0.2
452,383 + ECD_00413 0.66 -1.2
452,384 - ECD_00413 0.66 -1.5
452,384 - ECD_00413 0.66 -1.9
452,388 - ECD_00413 0.66 -0.9
452,388 - ECD_00413 0.66 +0.5
452,627 - ECD_00413 0.74 +0.9
452,748 - ECD_00413 0.78 -0.0
452,905 + ECD_00413 0.83 -0.3
452,981 - ECD_00413 0.85 +0.3
453,159 - -1.9
453,221 - +1.3
453,221 - -1.0
453,221 - -0.3
453,221 - -0.8
453,221 - -0.3
453,221 - -0.5
453,221 - -0.1
453,221 - -0.5
453,246 - +0.3
453,342 - -0.3
453,455 - -0.1
453,468 + -1.0
453,474 - -0.5
453,474 - +0.5
453,584 - +0.6
453,584 - +0.5
453,584 - -1.2
453,584 - +0.3
453,584 - -0.7
453,692 - ECD_00414 0.18 -0.0
453,847 - ECD_00414 0.31 -1.4
454,028 + ECD_00414 0.47 -1.5
454,028 + ECD_00414 0.47 -1.4
454,029 - ECD_00414 0.47 -0.8
454,082 - ECD_00414 0.51 +0.3
454,082 - ECD_00414 0.51 +0.1
454,111 - ECD_00414 0.54 +0.8
454,111 - ECD_00414 0.54 -0.4
454,148 + ECD_00414 0.57 -1.4
454,239 - ECD_00414 0.64 +0.2
454,239 - ECD_00414 0.64 +0.2
454,239 - ECD_00414 0.64 -0.8
454,256 + ECD_00414 0.66 -1.2
454,352 + ECD_00414 0.74 +0.2
454,353 - ECD_00414 0.74 -0.6
454,353 - ECD_00414 0.74 +1.5
454,353 - ECD_00414 0.74 +0.4
454,365 - ECD_00414 0.75 +0.5
454,365 - ECD_00414 0.75 +1.0

Or see this region's nucleotide sequence