Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00401 and ECD_00402 are separated by 180 nucleotides ECD_00402 and ECD_00403 are separated by 29 nucleotides ECD_00403 and ECD_00404 are separated by 48 nucleotides
ECD_00401: ECD_00401 - putative multidrug ABC transporter ATPase, at 439,682 to 441,463
_00401
ECD_00402: ECD_00402 - nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB, at 441,644 to 441,982
_00402
ECD_00403: ECD_00403 - ammonium transporter, at 442,012 to 443,298
_00403
ECD_00404: ECD_00404 - acyl-CoA thioesterase 2, at 443,347 to 444,207
_00404
Position (kb) 442
443
444 Strain fitness (log2 ratio) -2
-1
0
1 at 441.076 kb on + strand, within ECD_00401 at 441.080 kb on + strand, within ECD_00401 at 441.080 kb on + strand, within ECD_00401 at 441.256 kb on + strand, within ECD_00401 at 441.257 kb on - strand, within ECD_00401 at 441.395 kb on + strand at 441.395 kb on + strand at 441.395 kb on + strand at 441.396 kb on - strand at 441.396 kb on - strand at 441.396 kb on - strand at 441.517 kb on + strand at 441.518 kb on - strand at 441.594 kb on - strand at 441.643 kb on + strand at 441.644 kb on - strand at 441.644 kb on - strand at 441.644 kb on - strand at 441.715 kb on + strand, within ECD_00402 at 441.794 kb on + strand, within ECD_00402 at 442.113 kb on + strand at 442.262 kb on - strand, within ECD_00403 at 442.363 kb on + strand, within ECD_00403 at 442.369 kb on + strand, within ECD_00403 at 442.369 kb on + strand, within ECD_00403 at 442.495 kb on + strand, within ECD_00403 at 442.495 kb on + strand, within ECD_00403 at 442.581 kb on + strand, within ECD_00403 at 442.702 kb on + strand, within ECD_00403 at 442.702 kb on + strand, within ECD_00403 at 442.703 kb on - strand, within ECD_00403 at 442.703 kb on - strand, within ECD_00403 at 442.839 kb on + strand, within ECD_00403 at 442.909 kb on + strand, within ECD_00403 at 442.947 kb on - strand, within ECD_00403 at 442.977 kb on + strand, within ECD_00403 at 442.977 kb on + strand, within ECD_00403 at 442.978 kb on - strand, within ECD_00403 at 443.055 kb on + strand, within ECD_00403 at 443.056 kb on - strand, within ECD_00403 at 443.288 kb on - strand at 443.395 kb on + strand at 443.468 kb on + strand, within ECD_00404 at 443.468 kb on + strand, within ECD_00404 at 443.468 kb on + strand, within ECD_00404 at 443.469 kb on - strand, within ECD_00404 at 443.573 kb on - strand, within ECD_00404 at 443.618 kb on + strand, within ECD_00404 at 443.618 kb on + strand, within ECD_00404 at 443.619 kb on - strand, within ECD_00404 at 443.764 kb on - strand, within ECD_00404 at 443.982 kb on - strand, within ECD_00404 at 443.997 kb on + strand, within ECD_00404 at 443.998 kb on - strand, within ECD_00404 at 444.037 kb on + strand, within ECD_00404 at 444.075 kb on - strand, within ECD_00404 at 444.116 kb on - strand, within ECD_00404 at 444.173 kb on - strand at 444.207 kb on + strand at 444.207 kb on + strand at 444.208 kb on - strand at 444.210 kb on - strand at 444.256 kb on + strand at 444.257 kb on - strand at 444.292 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 441,076 + ECD_00401 0.78 -0.2 441,080 + ECD_00401 0.78 -0.9 441,080 + ECD_00401 0.78 -0.5 441,256 + ECD_00401 0.88 -0.4 441,257 - ECD_00401 0.88 -2.2 441,395 + -1.2 441,395 + -0.4 441,395 + +0.9 441,396 - -1.3 441,396 - +0.2 441,396 - -0.4 441,517 + +0.3 441,518 - -0.8 441,594 - -1.5 441,643 + +0.1 441,644 - -0.3 441,644 - +0.2 441,644 - -0.3 441,715 + ECD_00402 0.21 -0.4 441,794 + ECD_00402 0.44 +0.5 442,113 + +1.3 442,262 - ECD_00403 0.19 -0.7 442,363 + ECD_00403 0.27 -1.7 442,369 + ECD_00403 0.28 -0.6 442,369 + ECD_00403 0.28 -0.0 442,495 + ECD_00403 0.38 +0.3 442,495 + ECD_00403 0.38 -0.5 442,581 + ECD_00403 0.44 +0.5 442,702 + ECD_00403 0.54 +1.1 442,702 + ECD_00403 0.54 +1.6 442,703 - ECD_00403 0.54 -1.0 442,703 - ECD_00403 0.54 -0.5 442,839 + ECD_00403 0.64 -0.2 442,909 + ECD_00403 0.70 +0.2 442,947 - ECD_00403 0.73 -1.2 442,977 + ECD_00403 0.75 +1.0 442,977 + ECD_00403 0.75 +0.1 442,978 - ECD_00403 0.75 -0.7 443,055 + ECD_00403 0.81 -1.6 443,056 - ECD_00403 0.81 +0.3 443,288 - +1.6 443,395 + -1.4 443,468 + ECD_00404 0.14 -0.5 443,468 + ECD_00404 0.14 -2.0 443,468 + ECD_00404 0.14 -0.4 443,469 - ECD_00404 0.14 +0.1 443,573 - ECD_00404 0.26 +1.3 443,618 + ECD_00404 0.31 +1.3 443,618 + ECD_00404 0.31 -0.7 443,619 - ECD_00404 0.32 -2.1 443,764 - ECD_00404 0.48 -1.5 443,982 - ECD_00404 0.74 -1.9 443,997 + ECD_00404 0.75 -2.0 443,998 - ECD_00404 0.76 -0.7 444,037 + ECD_00404 0.80 -0.5 444,075 - ECD_00404 0.85 -0.7 444,116 - ECD_00404 0.89 -0.5 444,173 - -0.4 444,207 + -2.0 444,207 + -0.7 444,208 - -0.9 444,210 - -1.4 444,256 + -0.9 444,257 - -2.5 444,292 + -1.2
Or see this region's nucleotide sequence