Strain Fitness in Escherichia coli BL21 around ECD_00344

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00343 and ECD_00344 are separated by 244 nucleotidesECD_00344 and ECD_00345 are separated by 125 nucleotides ECD_00343: ECD_00343 - manno(fructo)kinase, at 375,546 to 376,454 _00343 ECD_00344: ECD_00344 - L-arabinose-inducible putative transporter, MFS family, at 376,699 to 377,883 _00344 ECD_00345: ECD_00345 - exonuclease, dsDNA, ATP-dependent, at 378,009 to 381,155 _00345 Position (kb) 376 377 378Strain fitness (log2 ratio) -2 -1 0 1at 375.725 kb on - strand, within ECD_00343at 375.728 kb on + strand, within ECD_00343at 375.729 kb on - strand, within ECD_00343at 375.821 kb on - strand, within ECD_00343at 375.863 kb on + strand, within ECD_00343at 375.889 kb on + strand, within ECD_00343at 375.890 kb on - strand, within ECD_00343at 375.890 kb on - strand, within ECD_00343at 375.919 kb on + strand, within ECD_00343at 376.074 kb on + strand, within ECD_00343at 376.075 kb on - strand, within ECD_00343at 376.094 kb on + strand, within ECD_00343at 376.107 kb on - strand, within ECD_00343at 376.315 kb on + strand, within ECD_00343at 376.325 kb on - strand, within ECD_00343at 376.453 kb on - strandat 376.453 kb on - strandat 376.570 kb on - strandat 376.674 kb on - strandat 376.678 kb on - strandat 376.693 kb on + strandat 376.693 kb on + strandat 376.695 kb on + strandat 376.700 kb on + strandat 376.752 kb on - strandat 376.817 kb on + strandat 376.817 kb on + strandat 376.821 kb on + strand, within ECD_00344at 376.822 kb on - strand, within ECD_00344at 376.822 kb on - strand, within ECD_00344at 376.823 kb on + strand, within ECD_00344at 376.849 kb on - strand, within ECD_00344at 376.849 kb on - strand, within ECD_00344at 376.860 kb on - strand, within ECD_00344at 376.860 kb on - strand, within ECD_00344at 376.913 kb on - strand, within ECD_00344at 376.949 kb on - strand, within ECD_00344at 377.156 kb on - strand, within ECD_00344at 377.156 kb on - strand, within ECD_00344at 377.156 kb on - strand, within ECD_00344at 377.167 kb on - strand, within ECD_00344at 377.210 kb on + strand, within ECD_00344at 377.211 kb on - strand, within ECD_00344at 377.211 kb on - strand, within ECD_00344at 377.211 kb on - strand, within ECD_00344at 377.211 kb on - strand, within ECD_00344at 377.211 kb on - strand, within ECD_00344at 377.211 kb on - strand, within ECD_00344at 377.223 kb on - strand, within ECD_00344at 377.223 kb on - strand, within ECD_00344at 377.383 kb on - strand, within ECD_00344at 377.745 kb on - strand, within ECD_00344at 377.747 kb on + strand, within ECD_00344at 377.757 kb on + strand, within ECD_00344at 377.930 kb on - strandat 377.937 kb on + strandat 378.006 kb on + strandat 378.011 kb on - strandat 378.027 kb on - strandat 378.105 kb on + strandat 378.105 kb on + strandat 378.228 kb on - strandat 378.237 kb on - strandat 378.385 kb on - strand, within ECD_00345at 378.495 kb on + strand, within ECD_00345at 378.496 kb on - strand, within ECD_00345at 378.582 kb on - strand, within ECD_00345

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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375,725 - ECD_00343 0.20 -0.5
375,728 + ECD_00343 0.20 -2.1
375,729 - ECD_00343 0.20 -1.8
375,821 - ECD_00343 0.30 -0.3
375,863 + ECD_00343 0.35 +1.0
375,889 + ECD_00343 0.38 +0.2
375,890 - ECD_00343 0.38 -2.3
375,890 - ECD_00343 0.38 -1.1
375,919 + ECD_00343 0.41 -0.1
376,074 + ECD_00343 0.58 -0.5
376,075 - ECD_00343 0.58 -0.9
376,094 + ECD_00343 0.60 +1.0
376,107 - ECD_00343 0.62 -1.0
376,315 + ECD_00343 0.85 +0.3
376,325 - ECD_00343 0.86 -1.4
376,453 - -0.6
376,453 - -0.8
376,570 - +0.6
376,674 - -0.3
376,678 - +0.6
376,693 + +0.5
376,693 + -0.8
376,695 + -0.8
376,700 + -0.6
376,752 - +0.3
376,817 + -2.2
376,817 + -1.5
376,821 + ECD_00344 0.10 -1.1
376,822 - ECD_00344 0.10 -0.3
376,822 - ECD_00344 0.10 -0.3
376,823 + ECD_00344 0.10 -0.6
376,849 - ECD_00344 0.13 +0.0
376,849 - ECD_00344 0.13 +0.7
376,860 - ECD_00344 0.14 +1.2
376,860 - ECD_00344 0.14 -1.1
376,913 - ECD_00344 0.18 -1.8
376,949 - ECD_00344 0.21 -1.6
377,156 - ECD_00344 0.39 -0.8
377,156 - ECD_00344 0.39 +0.9
377,156 - ECD_00344 0.39 +0.6
377,167 - ECD_00344 0.39 -1.9
377,210 + ECD_00344 0.43 -1.8
377,211 - ECD_00344 0.43 -0.7
377,211 - ECD_00344 0.43 -0.2
377,211 - ECD_00344 0.43 -1.0
377,211 - ECD_00344 0.43 +0.2
377,211 - ECD_00344 0.43 -0.2
377,211 - ECD_00344 0.43 -1.6
377,223 - ECD_00344 0.44 -2.7
377,223 - ECD_00344 0.44 -0.5
377,383 - ECD_00344 0.58 +0.7
377,745 - ECD_00344 0.88 +0.7
377,747 + ECD_00344 0.88 -2.0
377,757 + ECD_00344 0.89 -0.6
377,930 - +0.1
377,937 + -0.2
378,006 + -2.0
378,011 - -1.5
378,027 - -0.1
378,105 + -2.4
378,105 + -0.1
378,228 - -0.5
378,237 - +0.3
378,385 - ECD_00345 0.12 +0.3
378,495 + ECD_00345 0.15 +1.3
378,496 - ECD_00345 0.15 +0.3
378,582 - ECD_00345 0.18 -0.6

Or see this region's nucleotide sequence