Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00265 and ECD_00266 are separated by 75 nucleotides ECD_00266 and ECD_00267 are separated by 212 nucleotides ECD_00267 and ECD_00268 are separated by 13 nucleotides
ECD_00265: ECD_00265 - hypothetical protein, at 294,036 to 294,248
_00265
ECD_00266: ECD_00266 - putative inner membrane protein, at 294,324 to 294,992
_00266
ECD_00267: ECD_00267 - choline dehydrogenase, a flavoprotein, at 295,205 to 296,875
_00267
ECD_00268: ECD_00268 - betaine aldehyde dehydrogenase, NAD-dependent, at 296,889 to 298,361
_00268
Position (kb) 295
296
297 Strain fitness (log2 ratio) -2
-1
0
1
2 at 294.224 kb on + strand, within ECD_00265 at 294.901 kb on - strand, within ECD_00266 at 295.447 kb on + strand, within ECD_00267 at 295.481 kb on - strand, within ECD_00267 at 295.635 kb on + strand, within ECD_00267 at 295.635 kb on + strand, within ECD_00267 at 295.636 kb on - strand, within ECD_00267 at 295.636 kb on - strand, within ECD_00267 at 295.636 kb on - strand, within ECD_00267 at 295.636 kb on - strand, within ECD_00267 at 295.640 kb on - strand, within ECD_00267 at 295.764 kb on + strand, within ECD_00267 at 295.765 kb on - strand, within ECD_00267 at 295.960 kb on - strand, within ECD_00267 at 295.969 kb on - strand, within ECD_00267 at 296.108 kb on + strand, within ECD_00267 at 296.108 kb on + strand, within ECD_00267 at 296.109 kb on - strand, within ECD_00267 at 296.215 kb on + strand, within ECD_00267 at 296.224 kb on + strand, within ECD_00267 at 296.239 kb on + strand, within ECD_00267 at 296.240 kb on - strand, within ECD_00267 at 296.463 kb on + strand, within ECD_00267 at 296.502 kb on + strand, within ECD_00267 at 296.506 kb on - strand, within ECD_00267 at 296.698 kb on - strand, within ECD_00267 at 296.698 kb on - strand, within ECD_00267 at 296.863 kb on - strand at 296.891 kb on - strand at 296.891 kb on - strand at 296.945 kb on - strand at 297.170 kb on - strand, within ECD_00268 at 297.291 kb on + strand, within ECD_00268 at 297.392 kb on + strand, within ECD_00268 at 297.392 kb on + strand, within ECD_00268 at 297.393 kb on - strand, within ECD_00268 at 297.503 kb on + strand, within ECD_00268 at 297.503 kb on + strand, within ECD_00268 at 297.644 kb on + strand, within ECD_00268 at 297.645 kb on - strand, within ECD_00268 at 297.645 kb on - strand, within ECD_00268 at 297.759 kb on + strand, within ECD_00268 at 297.760 kb on - strand, within ECD_00268
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 294,224 + ECD_00265 0.88 -2.2 294,901 - ECD_00266 0.86 -1.0 295,447 + ECD_00267 0.14 -0.5 295,481 - ECD_00267 0.17 -0.6 295,635 + ECD_00267 0.26 -0.7 295,635 + ECD_00267 0.26 -1.4 295,636 - ECD_00267 0.26 +0.4 295,636 - ECD_00267 0.26 -1.1 295,636 - ECD_00267 0.26 -1.2 295,636 - ECD_00267 0.26 -0.8 295,640 - ECD_00267 0.26 -1.0 295,764 + ECD_00267 0.33 -1.2 295,765 - ECD_00267 0.34 +0.1 295,960 - ECD_00267 0.45 -0.4 295,969 - ECD_00267 0.46 -1.9 296,108 + ECD_00267 0.54 -0.7 296,108 + ECD_00267 0.54 -1.0 296,109 - ECD_00267 0.54 +1.3 296,215 + ECD_00267 0.60 -0.4 296,224 + ECD_00267 0.61 -0.2 296,239 + ECD_00267 0.62 +1.8 296,240 - ECD_00267 0.62 -0.2 296,463 + ECD_00267 0.75 +0.3 296,502 + ECD_00267 0.78 -2.6 296,506 - ECD_00267 0.78 -0.1 296,698 - ECD_00267 0.89 -1.3 296,698 - ECD_00267 0.89 -0.3 296,863 - -0.5 296,891 - -0.9 296,891 - -1.4 296,945 - +0.7 297,170 - ECD_00268 0.19 +0.3 297,291 + ECD_00268 0.27 -1.3 297,392 + ECD_00268 0.34 +0.3 297,392 + ECD_00268 0.34 -1.9 297,393 - ECD_00268 0.34 +0.5 297,503 + ECD_00268 0.42 +1.4 297,503 + ECD_00268 0.42 -1.4 297,644 + ECD_00268 0.51 -0.7 297,645 - ECD_00268 0.51 +0.1 297,645 - ECD_00268 0.51 -0.2 297,759 + ECD_00268 0.59 -1.3 297,760 - ECD_00268 0.59 +0.2
Or see this region's nucleotide sequence