Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00246 and ECD_00247 are separated by 246 nucleotides ECD_00247 and ECD_00248 are separated by 312 nucleotides
ECD_00246: ECD_00246 - DUF1440 family inner membrane acid resistance protein, at 273,177 to 273,791
_00246
ECD_00247: ECD_00247 - UPF0153 cysteine cluster protein, at 274,038 to 274,367
_00247
ECD_00248: ECD_00248 - ECP production pilus chaperone, at 274,680 to 275,390
_00248
ECD_00249: ECD_00249 - polymerized tip adhesin of ECP fibers, at 275,359 to 277,002
_00249
Position (kb) 274
275 Strain fitness (log2 ratio) -2
-1
0
1 at 273.056 kb on + strand at 273.057 kb on - strand at 273.148 kb on + strand at 273.161 kb on + strand at 273.176 kb on + strand at 273.450 kb on + strand, within ECD_00246 at 273.452 kb on + strand, within ECD_00246 at 273.473 kb on + strand, within ECD_00246 at 273.694 kb on + strand, within ECD_00246 at 273.746 kb on + strand at 273.883 kb on + strand at 273.953 kb on + strand at 274.006 kb on + strand at 274.028 kb on + strand at 274.029 kb on - strand at 274.033 kb on + strand at 274.041 kb on + strand at 274.148 kb on - strand, within ECD_00247 at 274.149 kb on + strand, within ECD_00247 at 274.246 kb on - strand, within ECD_00247 at 274.272 kb on - strand, within ECD_00247 at 274.378 kb on + strand at 274.379 kb on - strand at 274.379 kb on - strand at 274.409 kb on - strand at 274.415 kb on + strand at 274.415 kb on + strand at 274.415 kb on + strand at 274.416 kb on - strand at 274.419 kb on + strand at 274.419 kb on + strand at 274.420 kb on - strand at 274.420 kb on - strand at 274.428 kb on - strand at 274.493 kb on + strand at 274.497 kb on + strand at 274.500 kb on + strand at 274.501 kb on - strand at 274.511 kb on + strand at 274.512 kb on - strand at 274.523 kb on + strand at 274.523 kb on + strand at 274.524 kb on - strand at 274.739 kb on + strand at 274.771 kb on - strand, within ECD_00248 at 274.804 kb on - strand, within ECD_00248 at 274.807 kb on + strand, within ECD_00248 at 274.851 kb on - strand, within ECD_00248 at 274.858 kb on - strand, within ECD_00248 at 274.862 kb on + strand, within ECD_00248 at 274.863 kb on - strand, within ECD_00248 at 274.884 kb on - strand, within ECD_00248 at 274.884 kb on - strand, within ECD_00248 at 274.884 kb on - strand, within ECD_00248 at 274.884 kb on - strand, within ECD_00248 at 274.887 kb on + strand, within ECD_00248 at 274.887 kb on + strand, within ECD_00248 at 274.888 kb on - strand, within ECD_00248 at 274.920 kb on - strand, within ECD_00248 at 274.942 kb on - strand, within ECD_00248 at 274.945 kb on - strand, within ECD_00248 at 275.087 kb on - strand, within ECD_00248 at 275.098 kb on + strand, within ECD_00248 at 275.193 kb on - strand, within ECD_00248 at 275.198 kb on + strand, within ECD_00248 at 275.218 kb on + strand, within ECD_00248 at 275.360 kb on + strand at 275.360 kb on + strand at 275.361 kb on - strand at 275.364 kb on + strand at 275.365 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 273,056 + -1.1 273,057 - -0.6 273,148 + +0.9 273,161 + +0.4 273,176 + +0.4 273,450 + ECD_00246 0.44 -2.3 273,452 + ECD_00246 0.45 -1.9 273,473 + ECD_00246 0.48 -1.0 273,694 + ECD_00246 0.84 +0.1 273,746 + +0.0 273,883 + +0.4 273,953 + -0.5 274,006 + -0.6 274,028 + +0.2 274,029 - -0.3 274,033 + +0.0 274,041 + -0.4 274,148 - ECD_00247 0.33 -2.7 274,149 + ECD_00247 0.34 -0.0 274,246 - ECD_00247 0.63 -0.4 274,272 - ECD_00247 0.71 +0.3 274,378 + -0.1 274,379 - -1.7 274,379 - -1.2 274,409 - -1.9 274,415 + +0.5 274,415 + -2.2 274,415 + +0.2 274,416 - +0.2 274,419 + -0.5 274,419 + -0.3 274,420 - -0.5 274,420 - -1.3 274,428 - -1.1 274,493 + -0.9 274,497 + -2.1 274,500 + -0.1 274,501 - -1.1 274,511 + -2.4 274,512 - -1.0 274,523 + +0.2 274,523 + -0.8 274,524 - -1.1 274,739 + -0.4 274,771 - ECD_00248 0.13 -1.3 274,804 - ECD_00248 0.17 -1.0 274,807 + ECD_00248 0.18 -1.6 274,851 - ECD_00248 0.24 +0.6 274,858 - ECD_00248 0.25 -1.3 274,862 + ECD_00248 0.26 -0.3 274,863 - ECD_00248 0.26 -1.0 274,884 - ECD_00248 0.29 -1.8 274,884 - ECD_00248 0.29 -0.1 274,884 - ECD_00248 0.29 -0.6 274,884 - ECD_00248 0.29 -1.0 274,887 + ECD_00248 0.29 +0.3 274,887 + ECD_00248 0.29 -0.8 274,888 - ECD_00248 0.29 -0.8 274,920 - ECD_00248 0.34 +0.3 274,942 - ECD_00248 0.37 -0.4 274,945 - ECD_00248 0.37 +0.1 275,087 - ECD_00248 0.57 -1.8 275,098 + ECD_00248 0.59 -0.2 275,193 - ECD_00248 0.72 -0.2 275,198 + ECD_00248 0.73 -1.1 275,218 + ECD_00248 0.76 +0.2 275,360 + -0.8 275,360 + -1.8 275,361 - -0.6 275,364 + -1.7 275,365 - -0.3
Or see this region's nucleotide sequence