Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00014 and ECD_00015 are separated by 88 nucleotides ECD_00015 and ECD_00016 are separated by 146 nucleotides
ECD_00014: ECD_00014 - chaperone Hsp70, with co-chaperone DnaJ, at 12,161 to 14,077
_00014
ECD_00015: ECD_00015 - chaperone Hsp40, DnaK co-chaperone, at 14,166 to 15,296
_00015
ECD_00016: ECD_00016 - IS186 hypothetical protein, at 15,443 to 16,555
_00016
Position (kb) 14
15
16 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 13.246 kb on + strand, within ECD_00014 at 13.272 kb on + strand, within ECD_00014 at 13.326 kb on + strand, within ECD_00014 at 13.326 kb on + strand, within ECD_00014 at 13.758 kb on + strand, within ECD_00014 at 14.084 kb on + strand at 14.084 kb on + strand at 14.086 kb on + strand at 14.086 kb on + strand at 14.098 kb on + strand at 14.098 kb on + strand at 14.098 kb on + strand at 14.098 kb on + strand at 14.098 kb on + strand at 14.100 kb on + strand at 14.100 kb on + strand at 14.171 kb on + strand at 14.184 kb on + strand at 14.259 kb on + strand at 14.306 kb on + strand, within ECD_00015 at 14.325 kb on + strand, within ECD_00015 at 14.325 kb on + strand, within ECD_00015 at 14.325 kb on + strand, within ECD_00015 at 14.361 kb on + strand, within ECD_00015 at 14.362 kb on - strand, within ECD_00015 at 14.370 kb on + strand, within ECD_00015 at 14.399 kb on + strand, within ECD_00015 at 14.520 kb on + strand, within ECD_00015 at 14.956 kb on - strand, within ECD_00015 at 15.337 kb on + strand at 15.354 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 13,246 + ECD_00014 0.57 -1.1 13,272 + ECD_00014 0.58 -0.9 13,326 + ECD_00014 0.61 +0.5 13,326 + ECD_00014 0.61 +0.5 13,758 + ECD_00014 0.83 +1.0 14,084 + +1.7 14,084 + +1.0 14,086 + +1.3 14,086 + +1.2 14,098 + +1.4 14,098 + +0.8 14,098 + +0.9 14,098 + +1.1 14,098 + +1.1 14,100 + +1.5 14,100 + +1.0 14,171 + -4.0 14,184 + -3.7 14,259 + -3.8 14,306 + ECD_00015 0.12 -3.4 14,325 + ECD_00015 0.14 -3.1 14,325 + ECD_00015 0.14 -0.5 14,325 + ECD_00015 0.14 -3.7 14,361 + ECD_00015 0.17 -2.4 14,362 - ECD_00015 0.17 -0.3 14,370 + ECD_00015 0.18 -2.0 14,399 + ECD_00015 0.21 -4.3 14,520 + ECD_00015 0.31 -0.9 14,956 - ECD_00015 0.70 -2.6 15,337 + +0.2 15,354 - -0.6
Or see this region's nucleotide sequence