Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5129 and Atu5130 overlap by 65 nucleotides Atu5130 and Atu5131 are separated by 124 nucleotides Atu5131 and Atu5132 overlap by 4 nucleotides
Atu5129: Atu5129 - ABC transporter substrate binding protein (mannopine), at 136,146 to 137,228
Atu5129
Atu5130: Atu5130 - attachment protein, at 137,164 to 137,454
Atu5130
Atu5131: Atu5131 - ABC transporter nucleotide binding/ATPase, at 137,579 to 138,373
Atu5131
Atu5132: Atu5132 - ABC transporter membrane spanning protein, at 138,370 to 139,632
Atu5132
Position (kb) 137
138 Strain fitness (log2 ratio) -2
-1
0
1
2 at 136.207 kb on + strand at 136.225 kb on + strand at 136.310 kb on - strand, within Atu5129 at 136.320 kb on - strand, within Atu5129 at 136.321 kb on - strand, within Atu5129 at 136.371 kb on + strand, within Atu5129 at 136.393 kb on + strand, within Atu5129 at 136.418 kb on - strand, within Atu5129 at 136.428 kb on - strand, within Atu5129 at 136.475 kb on - strand, within Atu5129 at 136.480 kb on + strand, within Atu5129 at 136.487 kb on - strand, within Atu5129 at 136.527 kb on - strand, within Atu5129 at 136.535 kb on - strand, within Atu5129 at 136.580 kb on - strand, within Atu5129 at 136.630 kb on - strand, within Atu5129 at 136.698 kb on + strand, within Atu5129 at 136.706 kb on - strand, within Atu5129 at 136.710 kb on + strand, within Atu5129 at 136.710 kb on + strand, within Atu5129 at 136.792 kb on + strand, within Atu5129 at 136.796 kb on - strand, within Atu5129 at 136.798 kb on + strand, within Atu5129 at 136.798 kb on + strand, within Atu5129 at 136.798 kb on + strand, within Atu5129 at 136.798 kb on + strand, within Atu5129 at 136.798 kb on + strand, within Atu5129 at 136.806 kb on + strand, within Atu5129 at 136.806 kb on - strand, within Atu5129 at 136.806 kb on - strand, within Atu5129 at 136.806 kb on - strand, within Atu5129 at 136.806 kb on - strand, within Atu5129 at 136.806 kb on - strand, within Atu5129 at 136.806 kb on - strand, within Atu5129 at 136.806 kb on - strand, within Atu5129 at 136.806 kb on - strand, within Atu5129 at 136.806 kb on - strand, within Atu5129 at 136.806 kb on - strand, within Atu5129 at 136.806 kb on - strand, within Atu5129 at 136.883 kb on - strand, within Atu5129 at 136.900 kb on - strand, within Atu5129 at 137.039 kb on + strand, within Atu5129 at 137.042 kb on - strand, within Atu5129 at 137.047 kb on - strand, within Atu5129 at 137.055 kb on + strand, within Atu5129 at 137.078 kb on - strand, within Atu5129 at 137.118 kb on + strand, within Atu5129 at 137.128 kb on - strand at 137.128 kb on - strand at 137.128 kb on - strand at 137.166 kb on - strand at 137.169 kb on + strand at 137.177 kb on - strand at 137.189 kb on + strand at 137.194 kb on + strand at 137.255 kb on + strand, within Atu5130 at 137.328 kb on + strand, within Atu5130 at 137.336 kb on - strand, within Atu5130 at 137.338 kb on + strand, within Atu5130 at 137.346 kb on - strand, within Atu5130 at 137.398 kb on + strand, within Atu5130 at 137.413 kb on - strand, within Atu5130 at 137.457 kb on - strand at 137.464 kb on + strand at 137.480 kb on - strand at 137.536 kb on + strand at 137.536 kb on + strand at 137.538 kb on + strand at 137.566 kb on - strand at 137.622 kb on + strand at 137.622 kb on + strand at 137.630 kb on - strand at 137.630 kb on - strand at 137.630 kb on - strand at 137.664 kb on + strand, within Atu5131 at 137.719 kb on - strand, within Atu5131 at 137.774 kb on + strand, within Atu5131 at 137.782 kb on - strand, within Atu5131 at 137.784 kb on + strand, within Atu5131 at 137.815 kb on - strand, within Atu5131 at 137.822 kb on - strand, within Atu5131 at 137.881 kb on - strand, within Atu5131 at 137.882 kb on - strand, within Atu5131 at 137.980 kb on - strand, within Atu5131 at 137.987 kb on - strand, within Atu5131 at 138.054 kb on + strand, within Atu5131 at 138.120 kb on + strand, within Atu5131 at 138.120 kb on + strand, within Atu5131 at 138.128 kb on - strand, within Atu5131 at 138.133 kb on + strand, within Atu5131 at 138.173 kb on - strand, within Atu5131 at 138.188 kb on + strand, within Atu5131 at 138.196 kb on - strand, within Atu5131 at 138.278 kb on + strand, within Atu5131 at 138.283 kb on + strand, within Atu5131 at 138.283 kb on + strand, within Atu5131 at 138.283 kb on + strand, within Atu5131 at 138.291 kb on - strand, within Atu5131 at 138.396 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 136,207 + +0.3 136,225 + +0.3 136,310 - Atu5129 0.15 -1.7 136,320 - Atu5129 0.16 +0.2 136,321 - Atu5129 0.16 -1.4 136,371 + Atu5129 0.21 +0.1 136,393 + Atu5129 0.23 -0.4 136,418 - Atu5129 0.25 +0.3 136,428 - Atu5129 0.26 +1.4 136,475 - Atu5129 0.30 -0.7 136,480 + Atu5129 0.31 +1.2 136,487 - Atu5129 0.31 +1.9 136,527 - Atu5129 0.35 -0.4 136,535 - Atu5129 0.36 -0.4 136,580 - Atu5129 0.40 +0.8 136,630 - Atu5129 0.45 +0.6 136,698 + Atu5129 0.51 +1.1 136,706 - Atu5129 0.52 +1.9 136,710 + Atu5129 0.52 +0.0 136,710 + Atu5129 0.52 +1.6 136,792 + Atu5129 0.60 +0.5 136,796 - Atu5129 0.60 +1.3 136,798 + Atu5129 0.60 +0.2 136,798 + Atu5129 0.60 +0.4 136,798 + Atu5129 0.60 +0.1 136,798 + Atu5129 0.60 -0.5 136,798 + Atu5129 0.60 +1.2 136,806 + Atu5129 0.61 -1.1 136,806 - Atu5129 0.61 -0.0 136,806 - Atu5129 0.61 -0.5 136,806 - Atu5129 0.61 +0.3 136,806 - Atu5129 0.61 +1.3 136,806 - Atu5129 0.61 -1.5 136,806 - Atu5129 0.61 +0.1 136,806 - Atu5129 0.61 +0.5 136,806 - Atu5129 0.61 +0.2 136,806 - Atu5129 0.61 -0.3 136,806 - Atu5129 0.61 +0.2 136,806 - Atu5129 0.61 +1.3 136,883 - Atu5129 0.68 +0.6 136,900 - Atu5129 0.70 +0.8 137,039 + Atu5129 0.82 +1.3 137,042 - Atu5129 0.83 -0.3 137,047 - Atu5129 0.83 +0.9 137,055 + Atu5129 0.84 -0.6 137,078 - Atu5129 0.86 -2.3 137,118 + Atu5129 0.90 +0.6 137,128 - +1.4 137,128 - -0.6 137,128 - +0.2 137,166 - +1.1 137,169 + -1.2 137,177 - +0.4 137,189 + +0.3 137,194 + -0.2 137,255 + Atu5130 0.31 -0.7 137,328 + Atu5130 0.56 -0.6 137,336 - Atu5130 0.59 +0.1 137,338 + Atu5130 0.60 -0.1 137,346 - Atu5130 0.63 -1.8 137,398 + Atu5130 0.80 -0.8 137,413 - Atu5130 0.86 -1.0 137,457 - -0.2 137,464 + -0.7 137,480 - +0.4 137,536 + +0.2 137,536 + -0.8 137,538 + -0.7 137,566 - +0.2 137,622 + +0.3 137,622 + -0.1 137,630 - +0.6 137,630 - -1.7 137,630 - +0.6 137,664 + Atu5131 0.11 -0.4 137,719 - Atu5131 0.18 -1.6 137,774 + Atu5131 0.25 +0.4 137,782 - Atu5131 0.26 +1.5 137,784 + Atu5131 0.26 +1.9 137,815 - Atu5131 0.30 -1.5 137,822 - Atu5131 0.31 +1.7 137,881 - Atu5131 0.38 -0.5 137,882 - Atu5131 0.38 +0.2 137,980 - Atu5131 0.50 -0.1 137,987 - Atu5131 0.51 +0.8 138,054 + Atu5131 0.60 +0.1 138,120 + Atu5131 0.68 +0.5 138,120 + Atu5131 0.68 +1.0 138,128 - Atu5131 0.69 -1.2 138,133 + Atu5131 0.70 -0.5 138,173 - Atu5131 0.75 +0.7 138,188 + Atu5131 0.77 +0.6 138,196 - Atu5131 0.78 -0.1 138,278 + Atu5131 0.88 +1.1 138,283 + Atu5131 0.89 +0.4 138,283 + Atu5131 0.89 +0.4 138,283 + Atu5131 0.89 +0.0 138,291 - Atu5131 0.90 -0.8 138,396 + -0.2
Or see this region's nucleotide sequence