Strain Fitness in Pseudomonas putida KT2440 around PP_5631

Experiment: Cholinium alpha ketoglutarate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium alpha ketoglutarate 10 vol%
4,322,455	+				-3.0
4,322,456	-				+1.0
4,322,798	+				+0.4
4,322,798	+				+0.6
4,322,877	+				+1.4
4,322,877	+				+1.3
4,322,878	-				+0.3
4,322,889	-				-0.2
4,323,012	+				-0.2
4,323,012	+				-1.1
4,323,012	+				+0.2
4,323,013	-				-0.6
4,323,028	-				-0.4
4,323,102	+				-0.4
4,323,102	+				-0.6
4,323,102	+				+0.4
4,323,132	+				-0.3
4,323,132	+				-0.1
4,323,133	-				+0.9
4,323,133	-				-0.2
4,323,342	+				+0.6
4,323,342	+				-0.3
4,323,342	+				+0.1
4,323,404	+				+0.4
4,323,426	+				-0.9
4,323,427	-				+0.3
4,323,486	+		PP_5631	0.26	-0.0
4,323,487	-		PP_5631	0.26	-0.1
4,323,487	-		PP_5631	0.26	-0.7
4,323,561	+		PP_5631	0.52	-0.5
4,323,562	-		PP_5631	0.52	-0.2
4,323,562	-		PP_5631	0.52	-0.4
4,323,568	+		PP_5631	0.54	-0.0
4,323,576	+		PP_5631	0.57	-0.4
4,323,577	-		PP_5631	0.58	-1.0
4,323,607	+		PP_5631	0.68	-1.3
4,323,608	-		PP_5631	0.68	-0.6
4,323,608	-		PP_5631	0.68	-1.2
4,323,685	+				-0.8
4,323,686	-				+0.6
4,323,686	-				+0.6
4,323,686	-				+0.2
4,323,880	+		PP_3794	0.18	-0.0
4,323,880	+		PP_3794	0.18	+0.4
4,323,880	+		PP_3794	0.18	+0.0
4,323,880	+		PP_3794	0.18	+0.9
4,323,880	+		PP_3794	0.18	+0.2
4,323,881	-		PP_3794	0.19	-0.5
4,323,881	-		PP_3794	0.19	+0.4
4,323,881	-		PP_3794	0.19	+0.8
4,324,022	-		PP_3794	0.34	+0.4
4,324,075	-		PP_3794	0.39	+0.7
4,324,107	+		PP_3794	0.43	+0.1
4,324,123	+		PP_3794	0.45	+0.1
4,324,199	-		PP_3794	0.53	+0.7
4,324,199	-		PP_3794	0.53	+0.1
4,324,232	+				+1.4
4,324,280	-		PP_3794	0.62	-0.1
4,324,342	+		PP_3794	0.68	+0.7
4,324,342	+		PP_3794	0.68	+0.3
4,324,342	+		PP_3794	0.68	+0.4
4,324,349	+		PP_3794	0.69	+0.5
4,324,350	-		PP_3794	0.69	-0.2
4,324,350	-		PP_3794	0.69	+0.0
4,324,350	-		PP_3794	0.69	+0.6
4,324,350	-		PP_3794	0.69	-1.1
4,324,350	-		PP_3794	0.69	+0.5
4,324,507	+		PP_3794	0.86	-1.5
4,324,507	+		PP_3794	0.86	-0.4
4,324,507	+		PP_3794	0.86	+1.1
4,324,508	-		PP_3794	0.86	+0.2
4,324,508	-		PP_3794	0.86	-0.1
4,324,591	+				-0.1
4,324,591	+				+0.5
4,324,592	-				+0.7
4,324,592	-				-0.6
4,324,592	-				+1.0
4,324,642	+				-0.6
4,324,643	-				-1.2
4,324,689	+				+0.8