Strain Fitness in Pseudomonas putida KT2440 around PP_4948

Experiment: Cholinium alpha ketoglutarate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium alpha ketoglutarate 10 vol%
5,634,651	-				+0.2
5,634,728	+				+0.3
5,634,728	+				-0.1
5,634,729	-				-0.8
5,634,732	-				+0.5
5,634,863	+				-0.6
5,635,007	-		PP_5718	0.29	-0.6
5,635,007	-		PP_5718	0.29	+0.2
5,635,069	+		PP_5718	0.38	+0.0
5,635,070	-		PP_5718	0.38	+0.3
5,635,070	-		PP_5718	0.38	-0.1
5,635,072	+		PP_5718	0.39	-1.8
5,635,105	+		PP_5718	0.44	-0.5
5,635,106	-		PP_5718	0.44	+0.4
5,635,106	-		PP_5718	0.44	-0.3
5,635,113	-		PP_5718	0.45	+0.7
5,635,128	-		PP_5718	0.47	-0.1
5,635,156	+		PP_5718	0.51	-2.2
5,635,157	-		PP_5718	0.51	+0.2
5,635,157	-				+1.7
5,635,197	+		PP_5718	0.57	-1.0
5,635,220	+		PP_5718	0.60	+0.2
5,635,221	-		PP_5718	0.61	+0.2
5,635,221	-		PP_5718	0.61	+0.1
5,635,241	-		PP_5718	0.63	+0.2
5,635,271	+		PP_5718	0.68	+0.3
5,635,272	-		PP_5718	0.68	+0.5
5,635,284	+		PP_5718	0.70	-0.1
5,635,285	-		PP_5718	0.70	-0.4
5,635,308	+		PP_5718	0.73	+0.2
5,635,309	-		PP_5718	0.73	-0.8
5,635,470	+				+0.3
5,635,470	+				+0.2
5,635,470	+				+0.7
5,635,471	-				-0.1
5,635,471	-				-0.8
5,635,472	+				-0.3
5,635,473	-				+0.3
5,635,473	-				+0.2
5,635,473	-				-0.7
5,635,473	-				-0.4
5,635,473	-				-0.2
5,635,491	+				-0.3
5,635,492	-				+0.6
5,635,555	+				+0.2
5,635,568	+				+0.2
5,635,568	+				-0.3
5,635,568	+				+0.5
5,635,569	-				-0.4
5,635,572	-				-0.0
5,635,572	-				+0.2
5,635,572	-				-1.1
5,635,599	+				-0.4
5,635,599	+				+0.5
5,635,600	-				+0.4
5,635,679	-				-0.6
5,635,787	-				-0.8
5,635,831	+		PP_4948	0.11	+0.3
5,635,866	+		PP_4948	0.13	+0.7
5,636,104	+				-0.3
5,636,159	+		PP_4948	0.29	+2.3
5,636,159	+		PP_4948	0.29	+0.5
5,636,159	+		PP_4948	0.29	-0.5
5,636,160	-				+3.7
5,636,160	-		PP_4948	0.29	-0.8
5,636,160	-		PP_4948	0.29	-0.2
5,636,160	-		PP_4948	0.29	-0.5
5,636,332	+		PP_4948	0.39	-0.5
5,636,333	-		PP_4948	0.39	+0.4
5,636,339	+		PP_4948	0.39	-0.4
5,636,339	+		PP_4948	0.39	-0.7
5,636,339	+		PP_4948	0.39	+1.1
5,636,340	-		PP_4948	0.39	+0.2
5,636,575	+		PP_4948	0.52	-0.3
5,636,576	-		PP_4948	0.52	-0.6
5,636,587	+		PP_4948	0.53	-0.4
5,636,587	+		PP_4948	0.53	-0.5
5,636,705	+		PP_4948	0.59	-0.8
5,636,705	+		PP_4948	0.59	-0.0
5,636,705	+		PP_4948	0.59	+0.8
5,636,705	+		PP_4948	0.59	+0.2
5,636,705	+		PP_4948	0.59	+0.4
5,636,705	+		PP_4948	0.59	-0.6
5,636,706	-		PP_4948	0.60	+0.1
5,636,706	-		PP_4948	0.60	-0.0
5,636,706	-		PP_4948	0.60	+0.1
5,636,731	+		PP_4948	0.61	+0.1
5,636,923	+		PP_4948	0.72	+1.0
5,636,923	+		PP_4948	0.72	-0.1
5,636,923	+		PP_4948	0.72	-0.2
5,636,924	-		PP_4948	0.72	+0.5
5,636,926	+		PP_4948	0.72	+0.8
5,636,926	+		PP_4948	0.72	-0.8
5,636,926	+		PP_4948	0.72	+0.9
5,636,926	+		PP_4948	0.72	-0.2
5,636,927	-		PP_4948	0.72	-0.3
5,636,927	-		PP_4948	0.72	+0.6
5,637,311	-				+0.5
5,637,338	-				-0.6
5,637,356	+				-0.2
5,637,369	+				+2.3
5,637,369	+				+0.1
5,637,402	+				-0.5
5,637,402	+				+0.1
5,637,402	+				-0.4
5,637,403	-				+0.6
5,637,434	-				+0.8
5,637,434	-				-0.1
5,637,656	+		PP_4949	0.13	-0.3
5,637,935	+		PP_4949	0.32	-0.3
5,637,936	-		PP_4949	0.33	+0.1
5,638,268	+		PP_4949	0.56	+0.3
5,638,269	-		PP_4949	0.56	+0.5
5,638,317	-		PP_4949	0.59	+0.6
5,638,376	+		PP_4949	0.63	-0.4
5,638,376	+		PP_4949	0.63	+0.5
5,638,377	-		PP_4949	0.63	+0.4
5,638,377	-		PP_4949	0.63	+0.3
5,638,377	-		PP_4949	0.63	-0.6