Strain Fitness in Pseudomonas putida KT2440 around PP_4483

Experiment: Cholinium alpha ketoglutarate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium alpha ketoglutarate 10 vol%
5,092,733	+				+1.0
5,092,733	+				+0.1
5,092,733	+				-0.0
5,092,738	+				+0.9
5,092,852	+		PP_4482	0.22	+0.3
5,092,880	-		PP_4482	0.24	-0.3
5,092,892	+		PP_4482	0.26	+1.8
5,093,034	-		PP_4482	0.40	+0.8
5,093,034	-		PP_4482	0.40	-0.6
5,093,067	+		PP_4482	0.43	-0.8
5,093,302	+		PP_4482	0.67	-0.0
5,093,509	+		PP_4482	0.88	+0.3
5,093,509	+		PP_4482	0.88	+0.1
5,093,509	+		PP_4482	0.88	+0.3
5,093,621	+				+0.1
5,093,621	+				+0.5
5,093,621	+				-0.7
5,093,622	-				-0.1
5,093,622	-				+0.3
5,093,622	-				+0.1
5,093,622	-				+0.7
5,093,626	+				+0.7
5,093,696	+				-0.4
5,093,721	+				+0.4
5,093,722	-				-0.2
5,093,876	+		PP_4483	0.20	-0.0
5,093,877	-		PP_4483	0.21	-0.7
5,094,037	+		PP_4483	0.41	-0.2
5,094,037	+		PP_4483	0.41	-0.4
5,094,037	+		PP_4483	0.41	-0.3
5,094,037	+		PP_4483	0.41	-0.4
5,094,037	+		PP_4483	0.41	-0.5
5,094,037	+		PP_4483	0.41	-0.4
5,094,037	+		PP_4483	0.41	-1.4
5,094,037	+		PP_4483	0.41	-0.8
5,094,038	-		PP_4483	0.42	-0.8
5,094,038	-		PP_4483	0.42	+0.7
5,094,038	-		PP_4483	0.42	-0.2
5,094,087	+		PP_4483	0.48	-0.8
5,094,088	-		PP_4483	0.48	-0.3
5,094,088	-		PP_4483	0.48	-1.4
5,094,480	+				+1.1
5,094,481	-				-0.1
5,094,481	-				+0.2
5,094,592	+		PP_4484	0.12	-0.1
5,094,592	+		PP_4484	0.12	-0.7
5,094,593	-		PP_4484	0.12	-0.2
5,094,593	-		PP_4484	0.12	+0.7
5,094,593	-		PP_4484	0.12	-0.4
5,094,593	-		PP_4484	0.12	-0.3
5,094,611	+		PP_4484	0.15	+0.2
5,094,611	+		PP_4484	0.15	-0.4
5,094,611	+		PP_4484	0.15	+0.6
5,094,611	+		PP_4484	0.15	+0.2
5,094,611	+		PP_4484	0.15	+0.6
5,094,611	+		PP_4484	0.15	-0.2
5,094,612	-		PP_4484	0.15	-1.5
5,094,613	+		PP_4484	0.15	+0.2
5,094,613	+		PP_4484	0.15	+1.6
5,094,613	+		PP_4484	0.15	+0.5
5,094,614	-		PP_4484	0.15	-0.7
5,094,631	+		PP_4484	0.18	+1.1
5,094,631	+		PP_4484	0.18	+0.6
5,094,631	+		PP_4484	0.18	-0.2
5,094,632	-		PP_4484	0.18	-2.9
5,094,632	-		PP_4484	0.18	-0.0
5,094,634	+		PP_4484	0.18	-0.6
5,094,635	-		PP_4484	0.18	+0.1
5,094,635	-		PP_4484	0.18	-0.0
5,094,734	-		PP_4484	0.32	+0.0
5,094,781	+		PP_4484	0.39	-0.5
5,094,874	+		PP_4484	0.53	+0.7
5,094,874	+		PP_4484	0.53	+0.4
5,094,874	+		PP_4484	0.53	+0.6
5,094,874	+		PP_4484	0.53	-0.1
5,094,884	+		PP_4484	0.54	+0.4
5,094,885	-		PP_4484	0.54	+0.7
5,094,917	+		PP_4484	0.59	-0.1
5,094,917	+		PP_4484	0.59	+0.2
5,094,917	+		PP_4484	0.59	-0.5
5,094,918	-		PP_4484	0.59	+0.0
5,094,918	-		PP_4484	0.59	-0.2
5,094,918	-		PP_4484	0.59	+0.1
5,094,944	+		PP_4484	0.63	-1.8
5,094,944	+		PP_4484	0.63	+0.2
5,094,982	+		PP_4484	0.68	-0.6
5,094,983	-		PP_4484	0.68	+0.3
5,094,983	-		PP_4484	0.68	-0.4
5,095,027	+		PP_4484	0.74	-0.7
5,095,027	+		PP_4484	0.74	-0.7
5,095,027	+		PP_4484	0.74	+0.2
5,095,027	+		PP_4484	0.74	+0.2
5,095,027	+		PP_4484	0.74	+0.5
5,095,028	-		PP_4484	0.75	-0.5
5,095,028	-		PP_4484	0.75	-0.1
5,095,028	-		PP_4484	0.75	-0.3
5,095,028	-		PP_4484	0.75	-0.8
5,095,033	+		PP_4484	0.75	+0.9
5,095,033	+		PP_4484	0.75	+0.2
5,095,033	+		PP_4484	0.75	+0.2
5,095,034	-		PP_4484	0.75	-0.6
5,095,034	-		PP_4484	0.75	-0.0
5,095,034	-		PP_4484	0.75	+0.6
5,095,163	-				-0.8
5,095,193	-				+0.6
5,095,205	+				-0.5
5,095,205	+				+0.8
5,095,206	-				-1.3
5,095,249	-				-0.4
5,095,249	-				-2.5
5,095,249	-				+0.2
5,095,287	+		PP_4485	0.12	+0.2
5,095,287	+		PP_4485	0.12	+0.6
5,095,287	+		PP_4485	0.12	-0.3
5,095,288	-		PP_4485	0.12	-0.5