Strain Fitness in Pseudomonas putida KT2440 around PP_2528

Experiment: Cholinium alpha ketoglutarate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium alpha ketoglutarate 10 vol%
2,873,605	+		PP_2526	0.81	+0.9
2,873,665	+				-0.3
2,873,666	-				-0.5
2,873,666	-				+0.4
2,873,666	-				+0.4
2,873,891	+		PP_2527	0.15	-0.3
2,873,891	+		PP_2527	0.15	-0.3
2,874,086	-		PP_2527	0.41	+0.4
2,874,086	-		PP_2527	0.41	-0.9
2,874,135	+		PP_2527	0.47	+0.9
2,874,209	+		PP_2527	0.57	+0.2
2,874,210	-		PP_2527	0.57	+0.4
2,874,210	-		PP_2527	0.57	+0.8
2,874,251	+		PP_2527	0.62	+0.2
2,874,251	+		PP_2527	0.62	+0.3
2,874,252	-		PP_2527	0.62	-0.4
2,874,252	-		PP_2527	0.62	+0.1
2,874,320	+		PP_2527	0.71	-1.2
2,874,321	-		PP_2527	0.71	-0.5
2,874,321	-		PP_2527	0.71	-0.9
2,874,528	-				-0.2
2,874,797	+		PP_2528	0.15	-1.5
2,874,972	+		PP_2528	0.29	+0.8
2,874,972	+		PP_2528	0.29	-0.0
2,874,973	-		PP_2528	0.29	+0.3
2,874,987	-		PP_2528	0.30	-0.3
2,875,158	+		PP_2528	0.43	+0.8
2,875,269	+		PP_2528	0.52	+0.8
2,875,269	+				+2.1
2,875,408	+		PP_2528	0.63	+0.2
2,875,409	-				+0.7
2,875,442	+		PP_2528	0.65	+0.6
2,875,443	-		PP_2528	0.66	+0.9
2,875,552	-		PP_2528	0.74	+1.1
2,875,728	+		PP_2528	0.88	-2.9
2,875,728	+		PP_2528	0.88	+1.0
2,875,806	+				+0.5
2,875,806	+				-0.4
2,875,807	-				+0.4
2,875,807	-				-0.3
2,875,807	-				-0.8
2,875,814	+				+1.1
2,876,001	-				+0.5
2,876,007	-				+0.3
2,876,007	-				-0.0
2,876,042	+				+0.2
2,876,043	-				+0.7
2,876,068	+				-0.2
2,876,069	-				+0.6
2,876,087	-				+0.3
2,876,262	+		PP_2530	0.62	+0.7
2,876,263	-		PP_2530	0.62	-0.8
2,876,380	+				-0.1
2,876,472	+				+1.5
2,876,473	-				-0.9
2,876,550	+		PP_2531	0.17	+0.2
2,876,570	+		PP_2531	0.19	+0.5
2,876,608	-		PP_2531	0.23	-0.8
2,876,695	+		PP_2531	0.32	+0.3
2,876,696	-		PP_2531	0.32	-0.5
2,876,696	-		PP_2531	0.32	+0.2