Strain Fitness in Pseudomonas putida KT2440 around PP_1560

Experiment: Cholinium alpha ketoglutarate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium alpha ketoglutarate 10 vol%
1,754,876	+		PP_1557	0.83	+1.3
1,754,877	-		PP_1557	0.83	-0.4
1,754,877	-		PP_1557	0.83	+0.2
1,754,877	-		PP_1557	0.83	+0.5
1,754,877	-		PP_1557	0.83	-0.6
1,754,877	-		PP_1557	0.83	+0.5
1,754,877	-		PP_1557	0.83	+0.7
1,754,880	+		PP_1557	0.84	-0.9
1,754,880	+		PP_1557	0.84	-2.2
1,754,880	+		PP_1557	0.84	+0.8
1,754,881	-		PP_1557	0.85	+1.4
1,754,881	-		PP_1557	0.85	-0.3
1,754,881	-		PP_1557	0.85	-0.0
1,754,881	-		PP_1557	0.85	+0.4
1,754,881	-		PP_1557	0.85	-1.0
1,754,932	-				+0.5
1,754,955	-				-0.0
1,754,971	+				-1.2
1,754,971	+				-1.8
1,754,971	+				-0.5
1,754,972	-				+0.1
1,755,098	+		PP_1558	0.45	-0.4
1,755,099	-		PP_1558	0.45	+0.7
1,755,118	+		PP_1558	0.51	+1.6
1,755,148	+		PP_1558	0.60	+1.1
1,755,148	+		PP_1558	0.60	+0.7
1,755,148	+		PP_1558	0.60	+0.1
1,755,149	-		PP_1558	0.60	-0.2
1,755,151	+		PP_1558	0.61	+0.1
1,755,152	-		PP_1558	0.61	-1.0
1,755,152	-		PP_1558	0.61	-0.7
1,755,152	-		PP_1558	0.61	+0.4
1,755,152	-		PP_1558	0.61	+0.6
1,755,152	-		PP_1558	0.61	-0.2
1,755,152	-		PP_1558	0.61	+0.2
1,755,152	-		PP_1558	0.61	-0.8
1,755,152	-		PP_1558	0.61	+0.1
1,755,264	+				+0.7
1,755,265	-				-0.7
1,755,265	-				-0.1
1,755,265	-				+0.1
1,755,305	+				+0.1
1,755,317	+				+0.3
1,755,368	+				-0.2
1,755,369	-				+0.3
1,755,563	+		PP_1559	0.24	-0.7
1,755,563	+		PP_1559	0.24	+0.2
1,755,563	+		PP_1559	0.24	-2.0
1,755,564	-		PP_1559	0.24	-1.3
1,755,608	+		PP_1559	0.38	+0.8
1,755,608	+		PP_1559	0.38	+1.4
1,755,609	-		PP_1559	0.38	-0.1
1,755,609	-		PP_1559	0.38	+0.8
1,755,664	+		PP_1559	0.55	+0.0
1,755,793	+				+0.5
1,755,793	+				+0.2
1,755,794	-				+0.6
1,755,989	-		PP_1560	0.66	+0.6
1,756,025	+		PP_1560	0.85	+0.1
1,756,026	-		PP_1560	0.86	+0.9
1,756,026	-		PP_1560	0.86	+0.4
1,756,026	-		PP_1560	0.86	-1.1
1,756,111	+		PP_1561	0.19	-0.2
1,756,112	-		PP_1561	0.19	+0.4
1,756,134	-		PP_1561	0.25	-0.2
1,756,167	+		PP_1561	0.34	-0.3
1,756,167	+		PP_1561	0.34	-0.3
1,756,168	-		PP_1561	0.34	+0.2
1,756,234	+				+1.4
1,756,234	+		PP_1561	0.52	+0.5
1,756,234	+		PP_1561	0.52	+0.1
1,756,701	-		PP_1562	0.42	+0.1
1,756,701	-		PP_1562	0.42	+0.4
1,756,919	+				+0.4
1,756,920	-				+0.8
1,756,963	+				-0.2
1,756,964	-				-0.0