Strain Fitness in Pseudomonas putida KT2440 around PP_0805

Experiment: Cholinium alpha ketoglutarate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium alpha ketoglutarate 10 vol%
924,552	+		PP_0804	0.70	-1.1
924,553	-		PP_0804	0.70	-0.6
924,553	-		PP_0804	0.70	-1.3
924,591	+		PP_0804	0.72	-0.3
924,591	+		PP_0804	0.72	-1.9
924,686	+		PP_0804	0.77	-0.5
924,687	-		PP_0804	0.77	-1.7
924,726	+		PP_0804	0.78	-1.0
924,727	-		PP_0804	0.79	+0.2
924,788	-		PP_0804	0.81	-0.5
925,049	-				-0.3
925,061	+				-1.4
925,061	+				-1.8
925,262	+				-1.2
925,262	+				-1.9
925,262	+				-0.4
925,263	-				-0.7
925,328	+				+1.2
925,328	+				-1.0
925,375	+		PP_0805	0.13	-0.2
925,376	-		PP_0805	0.13	-0.7
925,386	-		PP_0805	0.14	-1.9
925,386	-		PP_0805	0.14	-0.3
925,592	+		PP_0805	0.28	-0.2
925,592	+				+1.6
925,593	-		PP_0805	0.28	-1.2
925,593	-		PP_0805	0.28	-1.9
925,593	-		PP_0805	0.28	-1.2
925,593	-		PP_0805	0.28	+0.0
925,616	+		PP_0805	0.30	-0.5
925,661	+		PP_0805	0.33	-0.9
925,662	-		PP_0805	0.33	-3.9
925,677	-		PP_0805	0.34	-0.6
925,707	+		PP_0805	0.36	-1.2
925,712	+		PP_0805	0.36	-1.0
925,713	-		PP_0805	0.36	-0.9
925,910	+		PP_0805	0.50	-0.9
925,923	-		PP_0805	0.51	-1.2
925,969	+		PP_0805	0.54	-1.0
925,970	-		PP_0805	0.54	-1.1
926,102	+		PP_0805	0.64	+0.2
926,102	+		PP_0805	0.64	-1.1
926,103	-		PP_0805	0.64	-1.1
926,103	-		PP_0805	0.64	-2.3
926,211	-		PP_0805	0.71	+0.1
926,309	+		PP_0805	0.78	+0.8
926,313	-				+1.6
926,351	+		PP_0805	0.81	-0.6
926,352	-		PP_0805	0.81	+0.1
926,352	-		PP_0805	0.81	-0.8
926,352	-		PP_0805	0.81	-0.7
926,530	+				-0.7
926,530	+				-0.9
926,530	+				-0.2
926,530	+				-1.0
926,530	+				-0.6
926,531	-				-0.5
926,531	-				-0.8
926,531	-				-1.6
926,531	-				-0.5
926,531	-				-0.5
926,531	-				-0.9
926,531	-				-0.7
926,531	-				-2.6
926,531	-				-1.2
926,531	-				+0.0
926,532	+				+0.7
926,532	+				-0.4
926,533	-				-0.6
926,533	-				-0.8
926,533	-				-0.5
926,533	-				+0.0
926,627	+				+0.0
926,627	+				+0.2
926,627	+				-1.8
926,636	+				-0.5
926,637	-				+0.9
926,663	-				+0.2
926,679	+				+0.5
926,680	-				-1.1
926,750	+				-1.5
926,750	+				-2.2
926,750	+				-0.4
926,751	-				-0.9
926,757	+				-0.4
926,759	+				-0.4
926,760	-				-1.3
927,289	+				-0.5
927,289	+				-0.8
927,289	+				-1.1
927,289	+				-1.2
927,290	-				-0.2
927,290	-				-1.5
927,290	-				-0.6
927,296	+				-0.3
927,353	+				-1.0
927,353	+				-0.6
927,353	+				-1.7
927,353	+				+0.1
927,353	+				-1.7
927,353	+				-0.7
927,353	+				-0.8
927,354	-				-1.3
927,354	-				-0.0
927,359	+				-1.0
927,359	+				-2.0
927,360	-				-0.5
927,360	-				+0.2
927,360	-				-0.2
927,360	-				-1.4
927,360	-				-1.5
927,392	+				-0.2
927,393	-				+0.7
927,419	+				-0.3
927,434	+				-0.4
927,434	+				-1.0
927,434	+				-0.5
927,435	-				-2.1
927,435	-				+0.0
927,435	-				-0.4
927,548	+				-0.0
927,548	+				+0.5
927,548	+				-1.6
927,549	-				-0.6
927,549	-				-1.1
927,549	-				-0.5
927,616	+				+0.1
927,616	+				-0.3
927,616	+				-1.7
927,617	-				-0.6
927,617	-				-0.1
927,617	-				-0.5
927,617	-				-0.3
927,623	+				-1.9
927,623	+				-1.4
927,624	-				-1.2
927,624	-				-0.4