Strain Fitness in Escherichia coli BL21 around ECD_r00006

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_r00005 and ECD_t00045 are separated by 184 nucleotidesECD_t00045 and ECD_r00006 are separated by 85 nucleotidesECD_r00006 and ECD_02482 are separated by 443 nucleotides ECD_r00005: ECD_r00005 - 23S ribosomal RNA, at 2,592,879 to 2,595,784 _r00005 ECD_t00045: ECD_t00045 - tRNA-Glu, at 2,595,969 to 2,596,044 _t00045 ECD_r00006: ECD_r00006 - 16S ribosomal RNA, at 2,596,130 to 2,597,671 _r00006 ECD_02482: ECD_02482 - protein disaggregation chaperone, at 2,598,115 to 2,600,688 _02482 Position (kb) 2596 2597 2598Strain fitness (log2 ratio) -2 -1 0 1at 2598.077 kb on - strandat 2598.078 kb on + strandat 2598.166 kb on - strandat 2598.191 kb on - strandat 2598.191 kb on - strandat 2598.254 kb on + strandat 2598.339 kb on + strandat 2598.342 kb on - strandat 2598.488 kb on + strand, within ECD_02482at 2598.544 kb on - strand, within ECD_02482at 2598.555 kb on + strand, within ECD_02482at 2598.556 kb on - strand, within ECD_02482at 2598.556 kb on - strand, within ECD_02482at 2598.556 kb on - strand, within ECD_02482at 2598.625 kb on - strand, within ECD_02482at 2598.625 kb on - strand, within ECD_02482at 2598.625 kb on - strand, within ECD_02482

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
remove
2,598,077 - +0.3
2,598,078 + +0.3
2,598,166 - +0.5
2,598,191 - +0.7
2,598,191 - +0.9
2,598,254 + -2.3
2,598,339 + -0.6
2,598,342 - +0.8
2,598,488 + ECD_02482 0.14 -2.0
2,598,544 - ECD_02482 0.17 -0.1
2,598,555 + ECD_02482 0.17 -1.4
2,598,556 - ECD_02482 0.17 +0.5
2,598,556 - ECD_02482 0.17 +0.2
2,598,556 - ECD_02482 0.17 +1.3
2,598,625 - ECD_02482 0.20 +0.8
2,598,625 - ECD_02482 0.20 +1.1
2,598,625 - ECD_02482 0.20 +0.9

Or see this region's nucleotide sequence