Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00071 and ECD_04293 are separated by 88 nucleotides ECD_04293 and ECD_00072 are separated by 101 nucleotides
ECD_00071: ECD_00071 - transcriptional DNA-binding transcriptional activator of sgrS sRNA, at 78,449 to 80,104
_00071
ECD_04293: ECD_04293 - inhibitor of glucose uptake, at 80,193 to 80,324
_04293
ECD_00072: ECD_00072 - broad specificity sugar efflux system, at 80,426 to 81,604
_00072
Position (kb) 80
81 Strain fitness (log2 ratio) -2
-1
0
1 at 79.208 kb on - strand, within ECD_00071 at 79.328 kb on - strand, within ECD_00071 at 79.328 kb on - strand, within ECD_00071 at 79.457 kb on - strand, within ECD_00071 at 79.490 kb on + strand, within ECD_00071 at 79.491 kb on - strand, within ECD_00071 at 79.491 kb on - strand, within ECD_00071 at 79.581 kb on - strand, within ECD_00071 at 79.726 kb on - strand, within ECD_00071 at 79.726 kb on - strand, within ECD_00071 at 79.729 kb on - strand, within ECD_00071 at 79.729 kb on - strand, within ECD_00071 at 79.826 kb on + strand, within ECD_00071 at 79.826 kb on + strand, within ECD_00071 at 79.826 kb on + strand, within ECD_00071 at 79.827 kb on - strand, within ECD_00071 at 79.837 kb on + strand, within ECD_00071 at 79.894 kb on - strand, within ECD_00071 at 79.918 kb on + strand, within ECD_00071 at 79.919 kb on - strand, within ECD_00071 at 79.987 kb on + strand at 79.987 kb on + strand at 80.104 kb on + strand at 80.105 kb on - strand at 80.153 kb on + strand at 80.161 kb on + strand at 80.214 kb on + strand, within ECD_04293 at 80.215 kb on - strand, within ECD_04293 at 80.350 kb on + strand at 80.379 kb on + strand at 80.381 kb on + strand at 80.382 kb on - strand at 80.382 kb on - strand at 80.425 kb on + strand at 80.425 kb on + strand at 80.426 kb on - strand at 80.426 kb on - strand at 80.426 kb on - strand at 80.479 kb on + strand at 80.527 kb on + strand at 80.675 kb on - strand, within ECD_00072 at 80.676 kb on + strand, within ECD_00072 at 80.709 kb on + strand, within ECD_00072 at 80.722 kb on + strand, within ECD_00072 at 80.732 kb on + strand, within ECD_00072 at 80.796 kb on + strand, within ECD_00072 at 80.935 kb on + strand, within ECD_00072 at 80.936 kb on - strand, within ECD_00072 at 80.995 kb on + strand, within ECD_00072 at 80.996 kb on - strand, within ECD_00072 at 81.042 kb on + strand, within ECD_00072 at 81.042 kb on + strand, within ECD_00072 at 81.067 kb on + strand, within ECD_00072 at 81.070 kb on + strand, within ECD_00072 at 81.075 kb on + strand, within ECD_00072 at 81.075 kb on + strand, within ECD_00072 at 81.075 kb on + strand, within ECD_00072 at 81.085 kb on - strand, within ECD_00072 at 81.125 kb on + strand, within ECD_00072 at 81.125 kb on + strand, within ECD_00072 at 81.125 kb on + strand, within ECD_00072 at 81.125 kb on + strand, within ECD_00072 at 81.125 kb on + strand, within ECD_00072 at 81.126 kb on - strand, within ECD_00072 at 81.126 kb on - strand, within ECD_00072 at 81.126 kb on - strand, within ECD_00072 at 81.130 kb on + strand, within ECD_00072 at 81.130 kb on + strand, within ECD_00072 at 81.136 kb on + strand, within ECD_00072 at 81.245 kb on + strand, within ECD_00072 at 81.245 kb on + strand, within ECD_00072 at 81.246 kb on - strand, within ECD_00072 at 81.282 kb on + strand, within ECD_00072 at 81.309 kb on - strand, within ECD_00072
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 79,208 - ECD_00071 0.46 +0.7 79,328 - ECD_00071 0.53 +1.3 79,328 - ECD_00071 0.53 -0.1 79,457 - ECD_00071 0.61 -0.0 79,490 + ECD_00071 0.63 +1.5 79,491 - ECD_00071 0.63 +0.3 79,491 - ECD_00071 0.63 -0.2 79,581 - ECD_00071 0.68 +0.2 79,726 - ECD_00071 0.77 -0.5 79,726 - ECD_00071 0.77 +0.0 79,729 - ECD_00071 0.77 -1.0 79,729 - ECD_00071 0.77 -0.3 79,826 + ECD_00071 0.83 +0.4 79,826 + ECD_00071 0.83 +0.8 79,826 + ECD_00071 0.83 -0.4 79,827 - ECD_00071 0.83 +0.7 79,837 + ECD_00071 0.84 -0.3 79,894 - ECD_00071 0.87 -0.5 79,918 + ECD_00071 0.89 -2.1 79,919 - ECD_00071 0.89 +0.6 79,987 + -1.5 79,987 + +0.6 80,104 + -0.4 80,105 - +0.9 80,153 + +0.1 80,161 + -0.4 80,214 + ECD_04293 0.16 +1.3 80,215 - ECD_04293 0.17 +0.7 80,350 + +1.2 80,379 + +1.2 80,381 + +1.1 80,382 - -1.7 80,382 - -0.4 80,425 + +0.5 80,425 + +0.7 80,426 - -0.6 80,426 - -0.7 80,426 - -1.4 80,479 + +0.4 80,527 + +0.9 80,675 - ECD_00072 0.21 -1.9 80,676 + ECD_00072 0.21 +0.5 80,709 + ECD_00072 0.24 +1.4 80,722 + ECD_00072 0.25 +0.7 80,732 + ECD_00072 0.26 +0.2 80,796 + ECD_00072 0.31 +0.2 80,935 + ECD_00072 0.43 -0.9 80,936 - ECD_00072 0.43 -0.4 80,995 + ECD_00072 0.48 +0.3 80,996 - ECD_00072 0.48 -2.6 81,042 + ECD_00072 0.52 +1.7 81,042 + ECD_00072 0.52 +0.0 81,067 + ECD_00072 0.54 +1.3 81,070 + ECD_00072 0.55 -0.3 81,075 + ECD_00072 0.55 +1.3 81,075 + ECD_00072 0.55 +0.5 81,075 + ECD_00072 0.55 +0.4 81,085 - ECD_00072 0.56 -0.3 81,125 + ECD_00072 0.59 +0.1 81,125 + ECD_00072 0.59 +0.1 81,125 + ECD_00072 0.59 +0.2 81,125 + ECD_00072 0.59 +0.4 81,125 + ECD_00072 0.59 +0.4 81,126 - ECD_00072 0.59 -0.7 81,126 - ECD_00072 0.59 -0.2 81,126 - ECD_00072 0.59 -0.2 81,130 + ECD_00072 0.60 -0.1 81,130 + ECD_00072 0.60 -0.0 81,136 + ECD_00072 0.60 +0.3 81,245 + ECD_00072 0.69 -0.9 81,245 + ECD_00072 0.69 +0.2 81,246 - ECD_00072 0.70 -0.4 81,282 + ECD_00072 0.73 -0.0 81,309 - ECD_00072 0.75 -2.3
Or see this region's nucleotide sequence