Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03964 and ECD_03965 are separated by 1 nucleotides ECD_03965 and ECD_03966 overlap by 14 nucleotides ECD_03966 and ECD_03967 overlap by 1 nucleotides ECD_03967 and ECD_03968 overlap by 4 nucleotides ECD_03968 and ECD_03969 are separated by 110 nucleotides
ECD_03964: ECD_03964 - 5-phospho-alpha-D-ribosyl 1,2-cyclic phosphate phosphodiesterase, at 4,221,531 to 4,222,289
_03964
ECD_03965: ECD_03965 - aminoalkylphosphonate N-acetyltransferase, at 4,222,291 to 4,222,725
_03965
ECD_03966: ECD_03966 - ribose 1,5-bisphosphokinase, at 4,222,712 to 4,223,269
_03966
ECD_03967: ECD_03967 - ribophosphonate triphosphate hydrolase, at 4,223,269 to 4,224,405
_03967
ECD_03968: ECD_03968 - ribophosphonate triphosphate synthase subunit; putative ABC transporter-related ATPase, at 4,224,402 to 4,225,082
_03968
ECD_03969: ECD_03969 - carbon-phosphorus lyase complex subunit, putative ATP transporter ATP-binding protein, at 4,225,193 to 4,225,951
_03969
Position (kb) 4223
4224
4225 Strain fitness (log2 ratio) -1
0
1 at 4222.293 kb on - strand at 4222.293 kb on - strand at 4222.474 kb on + strand, within ECD_03965 at 4222.691 kb on + strand at 4222.692 kb on - strand at 4222.820 kb on - strand, within ECD_03966 at 4222.820 kb on - strand, within ECD_03966 at 4222.820 kb on - strand, within ECD_03966 at 4223.041 kb on - strand, within ECD_03966 at 4223.044 kb on - strand, within ECD_03966 at 4223.313 kb on + strand at 4223.313 kb on + strand at 4223.313 kb on + strand at 4223.314 kb on - strand at 4223.314 kb on - strand at 4223.314 kb on - strand at 4223.314 kb on - strand at 4223.314 kb on - strand at 4223.501 kb on + strand, within ECD_03967 at 4223.819 kb on + strand, within ECD_03967 at 4223.849 kb on + strand, within ECD_03967 at 4223.849 kb on + strand, within ECD_03967 at 4223.850 kb on - strand, within ECD_03967 at 4223.862 kb on - strand, within ECD_03967 at 4223.865 kb on - strand, within ECD_03967 at 4223.873 kb on + strand, within ECD_03967 at 4223.874 kb on - strand, within ECD_03967 at 4223.874 kb on - strand, within ECD_03967 at 4224.130 kb on + strand, within ECD_03967 at 4224.362 kb on - strand at 4224.362 kb on - strand at 4224.387 kb on + strand at 4224.388 kb on - strand at 4224.446 kb on + strand at 4224.447 kb on - strand at 4224.450 kb on + strand at 4224.474 kb on + strand, within ECD_03968 at 4224.474 kb on + strand, within ECD_03968 at 4224.475 kb on - strand, within ECD_03968 at 4224.475 kb on - strand, within ECD_03968 at 4224.591 kb on - strand, within ECD_03968 at 4224.591 kb on - strand, within ECD_03968 at 4224.770 kb on + strand, within ECD_03968 at 4224.910 kb on + strand, within ECD_03968 at 4224.910 kb on + strand, within ECD_03968 at 4224.910 kb on + strand, within ECD_03968 at 4224.910 kb on + strand, within ECD_03968 at 4224.910 kb on + strand, within ECD_03968 at 4224.911 kb on - strand, within ECD_03968 at 4224.911 kb on - strand, within ECD_03968 at 4224.911 kb on - strand, within ECD_03968 at 4224.911 kb on - strand, within ECD_03968 at 4224.930 kb on + strand, within ECD_03968 at 4225.071 kb on + strand at 4225.071 kb on + strand at 4225.072 kb on - strand at 4225.072 kb on - strand at 4225.076 kb on + strand at 4225.172 kb on + strand at 4225.229 kb on - strand at 4225.335 kb on - strand, within ECD_03969
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 4,222,293 - -0.4 4,222,293 - -0.9 4,222,474 + ECD_03965 0.42 -0.9 4,222,691 + -0.5 4,222,692 - -0.3 4,222,820 - ECD_03966 0.19 -0.5 4,222,820 - ECD_03966 0.19 -0.2 4,222,820 - ECD_03966 0.19 +0.5 4,223,041 - ECD_03966 0.59 -0.4 4,223,044 - ECD_03966 0.59 -0.5 4,223,313 + -0.5 4,223,313 + +0.3 4,223,313 + -0.8 4,223,314 - +0.4 4,223,314 - +0.2 4,223,314 - -0.3 4,223,314 - +0.1 4,223,314 - -0.5 4,223,501 + ECD_03967 0.20 -0.5 4,223,819 + ECD_03967 0.48 +0.5 4,223,849 + ECD_03967 0.51 +0.1 4,223,849 + ECD_03967 0.51 -1.2 4,223,850 - ECD_03967 0.51 -0.1 4,223,862 - ECD_03967 0.52 -0.2 4,223,865 - ECD_03967 0.52 -0.4 4,223,873 + ECD_03967 0.53 -0.1 4,223,874 - ECD_03967 0.53 -1.7 4,223,874 - ECD_03967 0.53 +0.1 4,224,130 + ECD_03967 0.76 -1.0 4,224,362 - +0.3 4,224,362 - -0.8 4,224,387 + +0.7 4,224,388 - -0.0 4,224,446 + +0.1 4,224,447 - -0.1 4,224,450 + +1.7 4,224,474 + ECD_03968 0.11 +0.3 4,224,474 + ECD_03968 0.11 +0.1 4,224,475 - ECD_03968 0.11 -0.1 4,224,475 - ECD_03968 0.11 +1.2 4,224,591 - ECD_03968 0.28 -0.3 4,224,591 - ECD_03968 0.28 +1.0 4,224,770 + ECD_03968 0.54 -0.2 4,224,910 + ECD_03968 0.75 -0.2 4,224,910 + ECD_03968 0.75 -0.1 4,224,910 + ECD_03968 0.75 +0.3 4,224,910 + ECD_03968 0.75 -0.1 4,224,910 + ECD_03968 0.75 +0.1 4,224,911 - ECD_03968 0.75 -0.3 4,224,911 - ECD_03968 0.75 -0.4 4,224,911 - ECD_03968 0.75 -0.3 4,224,911 - ECD_03968 0.75 +0.2 4,224,930 + ECD_03968 0.78 +0.1 4,225,071 + -0.5 4,225,071 + -0.2 4,225,072 - -0.6 4,225,072 - -0.2 4,225,076 + -0.6 4,225,172 + -0.7 4,225,229 - -0.4 4,225,335 - ECD_03969 0.19 -0.4
Or see this region's nucleotide sequence