Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02755 and ECD_02756 are separated by 357 nucleotides ECD_02756 and ECD_02757 are separated by 214 nucleotides
ECD_02755: ECD_02755 - mechanosensitive channel protein, small conductance, at 2,899,805 to 2,900,665
_02755
ECD_02756: ECD_02756 - fructose-bisphosphate aldolase, class II, at 2,901,023 to 2,902,102
_02756
ECD_02757: ECD_02757 - phosphoglycerate kinase, at 2,902,317 to 2,903,480
_02757
Position (kb)
2901
2902
2903 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2900.044 kb on + strand, within ECD_02755 at 2900.045 kb on - strand, within ECD_02755 at 2900.085 kb on + strand, within ECD_02755 at 2900.085 kb on + strand, within ECD_02755 at 2900.086 kb on - strand, within ECD_02755 at 2900.138 kb on - strand, within ECD_02755 at 2900.138 kb on - strand, within ECD_02755 at 2900.141 kb on - strand, within ECD_02755 at 2900.141 kb on - strand, within ECD_02755 at 2900.143 kb on + strand, within ECD_02755 at 2900.179 kb on + strand, within ECD_02755 at 2900.262 kb on + strand, within ECD_02755 at 2900.262 kb on + strand, within ECD_02755 at 2900.262 kb on + strand, within ECD_02755 at 2900.263 kb on - strand, within ECD_02755 at 2900.297 kb on + strand, within ECD_02755 at 2900.298 kb on - strand, within ECD_02755 at 2900.298 kb on - strand, within ECD_02755 at 2900.351 kb on + strand, within ECD_02755 at 2900.352 kb on - strand, within ECD_02755 at 2900.352 kb on - strand, within ECD_02755 at 2900.352 kb on - strand, within ECD_02755 at 2900.352 kb on - strand, within ECD_02755 at 2900.352 kb on - strand, within ECD_02755 at 2900.352 kb on - strand, within ECD_02755 at 2900.370 kb on - strand, within ECD_02755 at 2900.370 kb on - strand, within ECD_02755 at 2900.451 kb on - strand, within ECD_02755 at 2900.587 kb on - strand at 2900.592 kb on - strand at 2900.592 kb on - strand at 2900.613 kb on - strand at 2900.613 kb on - strand at 2900.637 kb on - strand at 2900.702 kb on + strand at 2900.703 kb on - strand at 2900.747 kb on + strand at 2900.767 kb on + strand at 2900.840 kb on + strand at 2900.840 kb on + strand at 2901.005 kb on + strand at 2901.005 kb on + strand at 2901.020 kb on - strand at 2901.020 kb on - strand at 2902.132 kb on - strand at 2902.132 kb on - strand at 2902.132 kb on - strand at 2902.132 kb on - strand at 2902.141 kb on - strand at 2902.360 kb on - strand at 2902.360 kb on - strand at 2902.360 kb on - strand at 2902.360 kb on - strand at 2902.360 kb on - strand at 2902.360 kb on - strand at 2902.365 kb on - strand at 2902.365 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 2,900,044 + ECD_02755 0.28 +0.4 2,900,045 - ECD_02755 0.28 -1.8 2,900,085 + ECD_02755 0.33 -2.5 2,900,085 + ECD_02755 0.33 +0.6 2,900,086 - ECD_02755 0.33 +0.1 2,900,138 - ECD_02755 0.39 -1.2 2,900,138 - ECD_02755 0.39 -1.8 2,900,141 - ECD_02755 0.39 -1.6 2,900,141 - ECD_02755 0.39 -2.1 2,900,143 + ECD_02755 0.39 -1.1 2,900,179 + ECD_02755 0.43 -0.7 2,900,262 + ECD_02755 0.53 -0.3 2,900,262 + ECD_02755 0.53 -0.3 2,900,262 + ECD_02755 0.53 -0.8 2,900,263 - ECD_02755 0.53 +0.5 2,900,297 + ECD_02755 0.57 -3.5 2,900,298 - ECD_02755 0.57 -1.0 2,900,298 - ECD_02755 0.57 -1.4 2,900,351 + ECD_02755 0.63 -1.5 2,900,352 - ECD_02755 0.64 -0.8 2,900,352 - ECD_02755 0.64 -0.3 2,900,352 - ECD_02755 0.64 -1.1 2,900,352 - ECD_02755 0.64 -1.3 2,900,352 - ECD_02755 0.64 +0.3 2,900,352 - ECD_02755 0.64 -0.3 2,900,370 - ECD_02755 0.66 +1.1 2,900,370 - ECD_02755 0.66 -0.2 2,900,451 - ECD_02755 0.75 -0.9 2,900,587 - -1.9 2,900,592 - -1.8 2,900,592 - -0.8 2,900,613 - -1.2 2,900,613 - -0.1 2,900,637 - -0.1 2,900,702 + -0.3 2,900,703 - -0.5 2,900,747 + -0.9 2,900,767 + -1.8 2,900,840 + -0.9 2,900,840 + -0.9 2,901,005 + -0.8 2,901,005 + +0.1 2,901,020 - +0.8 2,901,020 - +0.2 2,902,132 - +1.1 2,902,132 - +0.2 2,902,132 - +1.1 2,902,132 - +0.1 2,902,141 - +0.8 2,902,360 - -0.0 2,902,360 - +1.6 2,902,360 - +0.0 2,902,360 - +0.2 2,902,360 - +0.1 2,902,360 - +1.6 2,902,365 - -1.1 2,902,365 - -1.1
Or see this region's nucleotide sequence