Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02325 and ECD_02326 are separated by 303 nucleotides ECD_02326 and ECD_02327 are separated by 128 nucleotides
ECD_02325: ECD_02325 - thiosulfate-binding protein, at 2,414,915 to 2,415,931
_02325
ECD_02326: ECD_02326 - furfural resistance protein, putative short-chain oxidoreductase, at 2,416,235 to 2,417,026
_02326
ECD_02327: ECD_02327 - repressor for murPQ, MurNAc 6-P inducible, at 2,417,155 to 2,418,012
_02327
Position (kb)
2416
2417
2418 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2415.250 kb on - strand, within ECD_02325 at 2415.250 kb on - strand, within ECD_02325 at 2415.382 kb on + strand, within ECD_02325 at 2415.451 kb on + strand, within ECD_02325 at 2415.451 kb on + strand, within ECD_02325 at 2415.452 kb on - strand, within ECD_02325 at 2415.452 kb on - strand, within ECD_02325 at 2415.452 kb on - strand, within ECD_02325 at 2415.452 kb on - strand, within ECD_02325 at 2415.454 kb on - strand, within ECD_02325 at 2415.590 kb on - strand, within ECD_02325 at 2415.590 kb on - strand, within ECD_02325 at 2415.654 kb on - strand, within ECD_02325 at 2415.671 kb on - strand, within ECD_02325 at 2415.671 kb on - strand, within ECD_02325 at 2415.671 kb on - strand, within ECD_02325 at 2415.672 kb on + strand, within ECD_02325 at 2415.672 kb on + strand, within ECD_02325 at 2415.673 kb on - strand, within ECD_02325 at 2415.834 kb on + strand at 2415.834 kb on + strand at 2415.864 kb on - strand at 2415.973 kb on + strand at 2416.120 kb on + strand at 2416.121 kb on - strand at 2416.121 kb on - strand at 2416.123 kb on + strand at 2416.123 kb on + strand at 2416.124 kb on - strand at 2416.124 kb on - strand at 2416.124 kb on - strand at 2416.184 kb on + strand at 2416.510 kb on - strand, within ECD_02326 at 2416.510 kb on - strand, within ECD_02326 at 2416.510 kb on - strand, within ECD_02326 at 2416.510 kb on - strand, within ECD_02326 at 2416.557 kb on - strand, within ECD_02326 at 2416.684 kb on + strand, within ECD_02326 at 2416.685 kb on - strand, within ECD_02326 at 2416.685 kb on - strand, within ECD_02326 at 2416.688 kb on - strand, within ECD_02326 at 2416.727 kb on - strand, within ECD_02326 at 2416.893 kb on - strand, within ECD_02326 at 2416.916 kb on - strand, within ECD_02326 at 2416.928 kb on + strand, within ECD_02326 at 2416.929 kb on - strand, within ECD_02326 at 2417.030 kb on - strand at 2417.030 kb on - strand at 2417.149 kb on + strand at 2417.173 kb on + strand at 2417.217 kb on + strand at 2417.218 kb on - strand at 2417.218 kb on - strand at 2417.290 kb on - strand, within ECD_02327 at 2417.449 kb on - strand, within ECD_02327 at 2417.449 kb on - strand, within ECD_02327 at 2417.498 kb on - strand, within ECD_02327 at 2417.498 kb on - strand, within ECD_02327 at 2417.793 kb on - strand, within ECD_02327 at 2417.793 kb on - strand, within ECD_02327 at 2417.801 kb on - strand, within ECD_02327 at 2418.006 kb on - strand at 2418.006 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 2,415,250 - ECD_02325 0.33 -1.1 2,415,250 - ECD_02325 0.33 -0.8 2,415,382 + ECD_02325 0.46 -0.9 2,415,451 + ECD_02325 0.53 +0.9 2,415,451 + ECD_02325 0.53 -1.4 2,415,452 - ECD_02325 0.53 -0.9 2,415,452 - ECD_02325 0.53 +0.4 2,415,452 - ECD_02325 0.53 +0.4 2,415,452 - ECD_02325 0.53 -0.1 2,415,454 - ECD_02325 0.53 -0.3 2,415,590 - ECD_02325 0.66 -0.0 2,415,590 - ECD_02325 0.66 -1.4 2,415,654 - ECD_02325 0.73 -2.2 2,415,671 - ECD_02325 0.74 -0.5 2,415,671 - ECD_02325 0.74 -0.9 2,415,671 - ECD_02325 0.74 -1.3 2,415,672 + ECD_02325 0.74 -0.9 2,415,672 + ECD_02325 0.74 -0.4 2,415,673 - ECD_02325 0.75 -0.8 2,415,834 + -0.9 2,415,834 + -0.7 2,415,864 - -0.6 2,415,973 + +0.5 2,416,120 + -1.5 2,416,121 - -0.8 2,416,121 - -3.0 2,416,123 + -0.1 2,416,123 + -1.6 2,416,124 - -1.8 2,416,124 - -1.4 2,416,124 - +0.2 2,416,184 + -0.9 2,416,510 - ECD_02326 0.35 -0.2 2,416,510 - ECD_02326 0.35 +0.6 2,416,510 - ECD_02326 0.35 -0.2 2,416,510 - ECD_02326 0.35 +0.3 2,416,557 - ECD_02326 0.41 +0.9 2,416,684 + ECD_02326 0.57 -2.5 2,416,685 - ECD_02326 0.57 +0.6 2,416,685 - ECD_02326 0.57 +0.8 2,416,688 - ECD_02326 0.57 +0.0 2,416,727 - ECD_02326 0.62 -0.3 2,416,893 - ECD_02326 0.83 +0.5 2,416,916 - ECD_02326 0.86 +0.7 2,416,928 + ECD_02326 0.88 -2.1 2,416,929 - ECD_02326 0.88 +1.0 2,417,030 - -0.8 2,417,030 - +0.0 2,417,149 + -2.7 2,417,173 + -1.5 2,417,217 + -1.8 2,417,218 - -1.7 2,417,218 - -1.0 2,417,290 - ECD_02327 0.16 -1.2 2,417,449 - ECD_02327 0.34 +0.7 2,417,449 - ECD_02327 0.34 -0.4 2,417,498 - ECD_02327 0.40 +0.8 2,417,498 - ECD_02327 0.40 +0.0 2,417,793 - ECD_02327 0.74 -0.1 2,417,793 - ECD_02327 0.74 +1.0 2,417,801 - ECD_02327 0.75 +0.1 2,418,006 - +0.0 2,418,006 - +0.3
Or see this region's nucleotide sequence