Strain Fitness in Escherichia coli BL21 around ECD_02216

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02215 and ECD_02216 are separated by 83 nucleotidesECD_02216 and ECD_02217 are separated by 58 nucleotides ECD_02215: ECD_02215 - glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase, at 2,294,813 to 2,296,030 _02215 ECD_02216: ECD_02216 - 5'-nucleotidase, at 2,296,114 to 2,296,713 _02216 ECD_02217: ECD_02217 - putative transporter, at 2,296,772 to 2,298,604 _02217 Position (kb) 2296 2297Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2295.248 kb on + strand, within ECD_02215at 2295.249 kb on - strand, within ECD_02215at 2295.316 kb on + strand, within ECD_02215at 2295.335 kb on - strand, within ECD_02215at 2295.346 kb on + strand, within ECD_02215at 2295.347 kb on - strand, within ECD_02215at 2295.682 kb on - strand, within ECD_02215at 2295.682 kb on - strand, within ECD_02215at 2295.769 kb on + strand, within ECD_02215at 2295.809 kb on + strand, within ECD_02215at 2295.809 kb on + strand, within ECD_02215at 2295.810 kb on - strand, within ECD_02215at 2295.811 kb on + strand, within ECD_02215at 2295.811 kb on + strand, within ECD_02215at 2295.811 kb on + strand, within ECD_02215at 2295.811 kb on + strand, within ECD_02215at 2295.811 kb on + strand, within ECD_02215at 2295.812 kb on - strand, within ECD_02215at 2295.974 kb on - strandat 2296.100 kb on + strandat 2296.100 kb on + strandat 2296.101 kb on - strandat 2296.104 kb on + strandat 2296.104 kb on + strandat 2296.105 kb on - strandat 2296.251 kb on + strand, within ECD_02216at 2296.391 kb on - strand, within ECD_02216at 2296.456 kb on - strand, within ECD_02216at 2296.655 kb on + strandat 2297.086 kb on + strand, within ECD_02217at 2297.087 kb on - strand, within ECD_02217at 2297.157 kb on - strand, within ECD_02217at 2297.237 kb on + strand, within ECD_02217at 2297.237 kb on + strand, within ECD_02217at 2297.237 kb on + strand, within ECD_02217at 2297.237 kb on + strand, within ECD_02217at 2297.238 kb on - strand, within ECD_02217at 2297.238 kb on - strand, within ECD_02217at 2297.240 kb on - strand, within ECD_02217at 2297.434 kb on + strand, within ECD_02217at 2297.434 kb on + strand, within ECD_02217at 2297.532 kb on - strand, within ECD_02217

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
remove
2,295,248 + ECD_02215 0.36 -0.8
2,295,249 - ECD_02215 0.36 +0.5
2,295,316 + ECD_02215 0.41 +0.1
2,295,335 - ECD_02215 0.43 -2.1
2,295,346 + ECD_02215 0.44 -1.8
2,295,347 - ECD_02215 0.44 -1.9
2,295,682 - ECD_02215 0.71 +0.0
2,295,682 - ECD_02215 0.71 -1.3
2,295,769 + ECD_02215 0.78 -0.0
2,295,809 + ECD_02215 0.82 +0.1
2,295,809 + ECD_02215 0.82 +0.3
2,295,810 - ECD_02215 0.82 -1.3
2,295,811 + ECD_02215 0.82 +0.4
2,295,811 + ECD_02215 0.82 +0.5
2,295,811 + ECD_02215 0.82 -1.0
2,295,811 + ECD_02215 0.82 -0.2
2,295,811 + ECD_02215 0.82 +0.9
2,295,812 - ECD_02215 0.82 -0.8
2,295,974 - -2.9
2,296,100 + -0.5
2,296,100 + +1.0
2,296,101 - -1.1
2,296,104 + -1.9
2,296,104 + -0.6
2,296,105 - -1.8
2,296,251 + ECD_02216 0.23 -0.4
2,296,391 - ECD_02216 0.46 -0.5
2,296,456 - ECD_02216 0.57 -3.8
2,296,655 + +1.4
2,297,086 + ECD_02217 0.17 -1.5
2,297,087 - ECD_02217 0.17 -0.6
2,297,157 - ECD_02217 0.21 +1.0
2,297,237 + ECD_02217 0.25 -3.0
2,297,237 + ECD_02217 0.25 -2.0
2,297,237 + ECD_02217 0.25 -0.2
2,297,237 + ECD_02217 0.25 -1.4
2,297,238 - ECD_02217 0.25 -0.2
2,297,238 - ECD_02217 0.25 -0.7
2,297,240 - ECD_02217 0.26 -0.3
2,297,434 + ECD_02217 0.36 -2.0
2,297,434 + ECD_02217 0.36 -1.9
2,297,532 - ECD_02217 0.41 +0.4

Or see this region's nucleotide sequence