Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02136 and ECD_02137 are separated by 829 nucleotides ECD_02137 and ECD_02138 are separated by 217 nucleotides
ECD_02136: ECD_02136 - ecotin, a serine protease inhibitor, at 2,197,555 to 2,198,043
_02136
ECD_02137: ECD_02137 - malate dehydrogenase, FAD/NAD(P)-binding domain, at 2,198,873 to 2,200,519
_02137
ECD_02138: ECD_02138 - microcin J25 efflux ABC transporter permease/ATPase, at 2,200,737 to 2,202,380
_02138
Position (kb)
2198
2199
2200
2201 Strain fitness (log2 ratio)
-2
-1
0
1 at 2197.982 kb on + strand, within ECD_02136 at 2197.982 kb on + strand, within ECD_02136 at 2197.982 kb on + strand, within ECD_02136 at 2198.041 kb on + strand at 2198.312 kb on + strand at 2198.850 kb on - strand at 2198.875 kb on - strand at 2198.875 kb on - strand at 2198.875 kb on - strand at 2199.065 kb on - strand, within ECD_02137 at 2199.065 kb on - strand, within ECD_02137 at 2199.065 kb on - strand, within ECD_02137 at 2199.124 kb on + strand, within ECD_02137 at 2199.309 kb on + strand, within ECD_02137 at 2199.310 kb on - strand, within ECD_02137 at 2199.578 kb on - strand, within ECD_02137 at 2199.806 kb on - strand, within ECD_02137 at 2199.851 kb on - strand, within ECD_02137 at 2199.876 kb on - strand, within ECD_02137 at 2200.099 kb on + strand, within ECD_02137 at 2200.100 kb on - strand, within ECD_02137 at 2200.100 kb on - strand, within ECD_02137 at 2200.112 kb on - strand, within ECD_02137 at 2200.118 kb on - strand, within ECD_02137 at 2200.133 kb on - strand, within ECD_02137 at 2200.374 kb on + strand at 2200.375 kb on - strand at 2200.419 kb on - strand at 2200.474 kb on + strand at 2200.474 kb on + strand at 2200.475 kb on - strand at 2200.732 kb on + strand at 2200.735 kb on + strand at 2200.739 kb on - strand at 2200.739 kb on - strand at 2200.875 kb on - strand at 2201.072 kb on + strand, within ECD_02138 at 2201.073 kb on - strand, within ECD_02138 at 2201.263 kb on + strand, within ECD_02138 at 2201.264 kb on - strand, within ECD_02138
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 2,197,982 + ECD_02136 0.87 +0.1 2,197,982 + ECD_02136 0.87 +1.1 2,197,982 + ECD_02136 0.87 -0.5 2,198,041 + -0.1 2,198,312 + -0.3 2,198,850 - +0.1 2,198,875 - -1.8 2,198,875 - +1.4 2,198,875 - +0.1 2,199,065 - ECD_02137 0.12 +0.5 2,199,065 - ECD_02137 0.12 +0.6 2,199,065 - ECD_02137 0.12 -0.1 2,199,124 + ECD_02137 0.15 -1.1 2,199,309 + ECD_02137 0.26 -1.1 2,199,310 - ECD_02137 0.27 +1.6 2,199,578 - ECD_02137 0.43 +0.8 2,199,806 - ECD_02137 0.57 -2.0 2,199,851 - ECD_02137 0.59 -0.5 2,199,876 - ECD_02137 0.61 -0.5 2,200,099 + ECD_02137 0.74 -0.8 2,200,100 - ECD_02137 0.74 -0.4 2,200,100 - ECD_02137 0.74 +0.0 2,200,112 - ECD_02137 0.75 +0.5 2,200,118 - ECD_02137 0.76 -0.2 2,200,133 - ECD_02137 0.77 -0.2 2,200,374 + -0.3 2,200,375 - -0.6 2,200,419 - +0.5 2,200,474 + +0.6 2,200,474 + -1.2 2,200,475 - +0.2 2,200,732 + +0.2 2,200,735 + -0.7 2,200,739 - -0.2 2,200,739 - -0.5 2,200,875 - -0.3 2,201,072 + ECD_02138 0.20 -0.5 2,201,073 - ECD_02138 0.20 -0.2 2,201,263 + ECD_02138 0.32 -0.1 2,201,264 - ECD_02138 0.32 -1.6
Or see this region's nucleotide sequence