Strain Fitness in Escherichia coli BL21 around ECD_02033

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02032 and ECD_02033 are separated by 322 nucleotidesECD_02033 and ECD_02034 are separated by 46 nucleotidesECD_02034 and ECD_02035 are separated by 103 nucleotides ECD_02032: ECD_02032 - hydoxyethylthiazole kinase, at 2,082,308 to 2,083,096 _02032 ECD_02033: ECD_02033 - hypothetical protein, at 2,083,419 to 2,083,664 _02033 ECD_02034: ECD_02034 - hypothetical protein, at 2,083,711 to 2,084,142 _02034 ECD_02035: ECD_02035 - hypothetical protein, at 2,084,246 to 2,084,911 _02035 Position (kb) 2083 2084Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2082.550 kb on + strand, within ECD_02032at 2082.551 kb on - strand, within ECD_02032at 2082.551 kb on - strand, within ECD_02032at 2082.571 kb on - strand, within ECD_02032at 2082.719 kb on - strand, within ECD_02032at 2083.097 kb on - strandat 2083.153 kb on - strandat 2083.418 kb on + strandat 2083.443 kb on + strandat 2083.443 kb on + strandat 2083.454 kb on + strand, within ECD_02033at 2083.454 kb on + strand, within ECD_02033at 2083.577 kb on + strand, within ECD_02033at 2083.649 kb on + strandat 2083.681 kb on + strandat 2083.685 kb on + strandat 2083.685 kb on + strandat 2083.685 kb on + strandat 2083.828 kb on + strand, within ECD_02034at 2084.018 kb on + strand, within ECD_02034at 2084.141 kb on - strandat 2084.370 kb on + strand, within ECD_02035at 2084.388 kb on + strand, within ECD_02035at 2084.537 kb on + strand, within ECD_02035at 2084.540 kb on - strand, within ECD_02035at 2084.600 kb on - strand, within ECD_02035at 2084.617 kb on - strand, within ECD_02035at 2084.617 kb on - strand, within ECD_02035

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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2,082,550 + ECD_02032 0.31 -0.2
2,082,551 - ECD_02032 0.31 +0.0
2,082,551 - ECD_02032 0.31 +1.1
2,082,571 - ECD_02032 0.33 -1.4
2,082,719 - ECD_02032 0.52 +2.6
2,083,097 - -0.0
2,083,153 - +2.2
2,083,418 + +2.7
2,083,443 + +3.0
2,083,443 + +2.9
2,083,454 + ECD_02033 0.14 +2.1
2,083,454 + ECD_02033 0.14 +2.3
2,083,577 + ECD_02033 0.64 +3.6
2,083,649 + +3.2
2,083,681 + +0.2
2,083,685 + -0.0
2,083,685 + -1.6
2,083,685 + +0.8
2,083,828 + ECD_02034 0.27 -2.6
2,084,018 + ECD_02034 0.71 -0.9
2,084,141 - -1.5
2,084,370 + ECD_02035 0.19 -1.8
2,084,388 + ECD_02035 0.21 +0.2
2,084,537 + ECD_02035 0.44 +0.5
2,084,540 - ECD_02035 0.44 -1.5
2,084,600 - ECD_02035 0.53 +0.2
2,084,617 - ECD_02035 0.56 -1.3
2,084,617 - ECD_02035 0.56 -1.0

Or see this region's nucleotide sequence