Strain Fitness in Escherichia coli BL21 around ECD_02024

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02021 and ECD_02024 are separated by 28 nucleotidesECD_02024 and ECD_02025 are separated by 299 nucleotides ECD_02021: ECD_02021 - D-tagatose 1,6-bisphosphate aldolase 2, subunit, at 2,072,862 to 2,074,124 _02021 ECD_02024: ECD_02024 - D-tagatose 1,6-bisphosphate aldolase 2, catalytic subunit, at 2,074,153 to 2,075,007 _02024 ECD_02025: ECD_02025 - fructose-bisphosphate aldolase class I, at 2,075,307 to 2,076,359 _02025 Position (kb) 2074 2075 2076Strain fitness (log2 ratio) -1 0 1 2 3at 2073.535 kb on - strand, within ECD_02021at 2073.571 kb on - strand, within ECD_02021at 2073.571 kb on - strand, within ECD_02021at 2073.788 kb on - strand, within ECD_02021at 2073.788 kb on - strand, within ECD_02021at 2073.959 kb on - strand, within ECD_02021at 2074.460 kb on + strand, within ECD_02024at 2074.461 kb on - strand, within ECD_02024at 2074.461 kb on - strand, within ECD_02024at 2074.465 kb on - strand, within ECD_02024at 2074.846 kb on - strand, within ECD_02024at 2075.174 kb on + strandat 2075.191 kb on - strandat 2075.196 kb on + strandat 2075.197 kb on - strandat 2075.197 kb on - strandat 2075.249 kb on + strandat 2075.250 kb on - strandat 2075.396 kb on + strandat 2075.520 kb on - strand, within ECD_02025at 2075.522 kb on - strand, within ECD_02025at 2075.606 kb on - strand, within ECD_02025at 2075.667 kb on + strand, within ECD_02025at 2075.668 kb on - strand, within ECD_02025at 2075.668 kb on - strand, within ECD_02025at 2075.668 kb on - strand, within ECD_02025at 2075.855 kb on - strand, within ECD_02025at 2075.855 kb on - strand, within ECD_02025at 2075.927 kb on - strand, within ECD_02025at 2075.961 kb on - strand, within ECD_02025

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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2,073,535 - ECD_02021 0.53 +2.0
2,073,571 - ECD_02021 0.56 +2.5
2,073,571 - ECD_02021 0.56 +2.2
2,073,788 - ECD_02021 0.73 +2.5
2,073,788 - ECD_02021 0.73 +1.8
2,073,959 - ECD_02021 0.87 +1.9
2,074,460 + ECD_02024 0.36 -0.4
2,074,461 - ECD_02024 0.36 +2.4
2,074,461 - ECD_02024 0.36 +3.1
2,074,465 - ECD_02024 0.36 +2.2
2,074,846 - ECD_02024 0.81 +2.2
2,075,174 + +0.8
2,075,191 - -1.4
2,075,196 + +0.5
2,075,197 - -0.2
2,075,197 - +0.8
2,075,249 + +0.1
2,075,250 - -0.4
2,075,396 + +0.7
2,075,520 - ECD_02025 0.20 -0.2
2,075,522 - ECD_02025 0.20 +1.1
2,075,606 - ECD_02025 0.28 -0.5
2,075,667 + ECD_02025 0.34 +0.5
2,075,668 - ECD_02025 0.34 +0.4
2,075,668 - ECD_02025 0.34 +0.5
2,075,668 - ECD_02025 0.34 +0.3
2,075,855 - ECD_02025 0.52 -1.0
2,075,855 - ECD_02025 0.52 +0.1
2,075,927 - ECD_02025 0.59 -0.1
2,075,961 - ECD_02025 0.62 -1.1

Or see this region's nucleotide sequence