Strain Fitness in Escherichia coli BL21 around ECD_01951

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01950 and ECD_01951 overlap by 4 nucleotidesECD_01951 and ECD_01952 are separated by 161 nucleotides ECD_01950: ECD_01950 - putative glycosyl transferase, at 2,014,939 to 2,016,159 _01950 ECD_01951: ECD_01951 - colanic acid biosynthesis protein, at 2,016,156 to 2,017,436 _01951 ECD_01952: ECD_01952 - putative colanic acid exporter, at 2,017,598 to 2,019,076 _01952 Position (kb) 2016 2017 2018Strain fitness (log2 ratio) -2 -1 0 1 2at 2015.669 kb on + strand, within ECD_01950at 2015.670 kb on - strand, within ECD_01950at 2016.079 kb on - strandat 2016.085 kb on - strandat 2016.376 kb on + strand, within ECD_01951at 2016.377 kb on - strand, within ECD_01951at 2016.377 kb on - strand, within ECD_01951at 2016.574 kb on + strand, within ECD_01951at 2016.574 kb on + strand, within ECD_01951at 2016.616 kb on + strand, within ECD_01951at 2016.772 kb on + strand, within ECD_01951at 2016.773 kb on - strand, within ECD_01951at 2016.773 kb on - strand, within ECD_01951at 2017.073 kb on + strand, within ECD_01951at 2017.457 kb on + strandat 2017.458 kb on - strandat 2017.473 kb on + strandat 2017.592 kb on - strandat 2017.837 kb on - strand, within ECD_01952at 2017.837 kb on - strand, within ECD_01952at 2017.881 kb on + strand, within ECD_01952at 2017.901 kb on - strand, within ECD_01952at 2017.961 kb on - strand, within ECD_01952at 2018.107 kb on + strand, within ECD_01952at 2018.217 kb on + strand, within ECD_01952at 2018.218 kb on - strand, within ECD_01952at 2018.340 kb on + strand, within ECD_01952at 2018.399 kb on - strand, within ECD_01952

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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2,015,669 + ECD_01950 0.60 -0.6
2,015,670 - ECD_01950 0.60 -1.6
2,016,079 - -0.2
2,016,085 - +0.3
2,016,376 + ECD_01951 0.17 -0.9
2,016,377 - ECD_01951 0.17 -0.3
2,016,377 - ECD_01951 0.17 +0.1
2,016,574 + ECD_01951 0.33 -1.0
2,016,574 + ECD_01951 0.33 -2.2
2,016,616 + ECD_01951 0.36 +0.6
2,016,772 + ECD_01951 0.48 -0.5
2,016,773 - ECD_01951 0.48 +0.5
2,016,773 - ECD_01951 0.48 -2.1
2,017,073 + ECD_01951 0.72 +0.1
2,017,457 + -1.5
2,017,458 - -1.6
2,017,473 + +1.6
2,017,592 - -0.9
2,017,837 - ECD_01952 0.16 +2.6
2,017,837 - ECD_01952 0.16 +0.8
2,017,881 + ECD_01952 0.19 -1.3
2,017,901 - ECD_01952 0.20 +0.5
2,017,961 - ECD_01952 0.25 -0.9
2,018,107 + ECD_01952 0.34 -0.7
2,018,217 + ECD_01952 0.42 +0.5
2,018,218 - ECD_01952 0.42 +0.2
2,018,340 + ECD_01952 0.50 -0.1
2,018,399 - ECD_01952 0.54 -0.8

Or see this region's nucleotide sequence