Strain Fitness in Escherichia coli BL21 around ECD_01913

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01911 and ECD_01912 are separated by 197 nucleotidesECD_01912 and ECD_01913 are separated by 118 nucleotidesECD_01913 and ECD_01914 are separated by 208 nucleotides ECD_01911: ECD_01911 - putative transporter, FUSC family inner membrane protein, at 1,975,777 to 1,976,835 _01911 ECD_01912: ECD_01912 - DNA gyrase inhibitor, at 1,977,033 to 1,977,506 _01912 ECD_01913: ECD_01913 - D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6b, at 1,977,625 to 1,978,791 _01913 ECD_01914: ECD_01914 - exodeoxyribonuclease I; exonuclease I, at 1,979,000 to 1,980,427 _01914 Position (kb) 1977 1978 1979Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1977.034 kb on + strandat 1977.107 kb on - strand, within ECD_01912at 1977.281 kb on + strand, within ECD_01912at 1977.392 kb on + strand, within ECD_01912at 1977.397 kb on - strand, within ECD_01912at 1977.474 kb on - strandat 1977.500 kb on - strandat 1977.800 kb on + strand, within ECD_01913at 1977.942 kb on + strand, within ECD_01913at 1978.087 kb on - strand, within ECD_01913at 1978.187 kb on + strand, within ECD_01913at 1978.188 kb on - strand, within ECD_01913at 1978.188 kb on - strand, within ECD_01913at 1978.248 kb on - strand, within ECD_01913at 1978.257 kb on + strand, within ECD_01913at 1978.580 kb on + strand, within ECD_01913at 1978.581 kb on - strand, within ECD_01913at 1979.353 kb on + strand, within ECD_01914at 1979.432 kb on + strand, within ECD_01914

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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1,977,034 + -1.6
1,977,107 - ECD_01912 0.16 -0.3
1,977,281 + ECD_01912 0.52 -1.4
1,977,392 + ECD_01912 0.76 +2.8
1,977,397 - ECD_01912 0.77 -1.9
1,977,474 - +0.6
1,977,500 - +0.2
1,977,800 + ECD_01913 0.15 -1.7
1,977,942 + ECD_01913 0.27 -1.4
1,978,087 - ECD_01913 0.40 -1.9
1,978,187 + ECD_01913 0.48 -1.2
1,978,188 - ECD_01913 0.48 -1.4
1,978,188 - ECD_01913 0.48 +3.0
1,978,248 - ECD_01913 0.53 +0.0
1,978,257 + ECD_01913 0.54 +0.1
1,978,580 + ECD_01913 0.82 -0.9
1,978,581 - ECD_01913 0.82 +0.3
1,979,353 + ECD_01914 0.25 -1.5
1,979,432 + ECD_01914 0.30 +0.9

Or see this region's nucleotide sequence