Strain Fitness in Escherichia coli BL21 around ECD_01898

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01897 and ECD_01898 are separated by 101 nucleotidesECD_01898 and ECD_t00036 are separated by 326 nucleotidesECD_t00036 and ECD_01899 are separated by 55 nucleotides ECD_01897: ECD_01897 - ssuEADCB/tauABCD operon transcriptional activator, at 1,965,112 to 1,966,062 _01897 ECD_01898: ECD_01898 - nitrogen assimilation regulon transcriptional regulator; autorepressor, at 1,966,164 to 1,967,081 _01898 ECD_t00036: ECD_t00036 - tRNA-Asn, at 1,967,408 to 1,967,483 _t00036 ECD_01899: ECD_01899 - L,D-transpeptidase linking Lpp to murein, at 1,967,539 to 1,968,471 _01899 Position (kb) 1966 1967 1968Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1965.397 kb on + strand, within ECD_01897at 1965.558 kb on + strand, within ECD_01897at 1965.828 kb on + strand, within ECD_01897at 1966.711 kb on + strand, within ECD_01898at 1966.712 kb on - strand, within ECD_01898at 1966.867 kb on - strand, within ECD_01898at 1967.524 kb on + strandat 1967.524 kb on + strandat 1967.524 kb on + strandat 1967.617 kb on + strandat 1967.762 kb on + strand, within ECD_01899at 1967.822 kb on + strand, within ECD_01899at 1967.850 kb on + strand, within ECD_01899at 1967.895 kb on + strand, within ECD_01899

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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1,965,397 + ECD_01897 0.30 +3.3
1,965,558 + ECD_01897 0.47 -0.3
1,965,828 + ECD_01897 0.75 +0.4
1,966,711 + ECD_01898 0.60 -0.3
1,966,712 - ECD_01898 0.60 +0.8
1,966,867 - ECD_01898 0.77 -1.5
1,967,524 + -1.5
1,967,524 + -1.2
1,967,524 + -0.5
1,967,617 + -2.2
1,967,762 + ECD_01899 0.24 -1.9
1,967,822 + ECD_01899 0.30 +0.0
1,967,850 + ECD_01899 0.33 -0.8
1,967,895 + ECD_01899 0.38 +0.8

Or see this region's nucleotide sequence