Strain Fitness in Escherichia coli BL21 around ECD_01839

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01837 and ECD_01838 are separated by 309 nucleotidesECD_01838 and ECD_01839 overlap by 4 nucleotidesECD_01839 and ECD_01840 are separated by 52 nucleotidesECD_01840 and ECD_01841 are separated by 40 nucleotides ECD_01837: ECD_01837 - aspartyl-tRNA synthetase, at 1,894,668 to 1,896,440 _01837 ECD_01838: ECD_01838 - isochorismatase family protein, at 1,896,750 to 1,897,316 _01838 ECD_01839: ECD_01839 - UPF0759 family protein, at 1,897,313 to 1,898,131 _01839 ECD_01840: ECD_01840 - MAPEG family inner membrane protein, at 1,898,184 to 1,898,579 _01840 ECD_01841: ECD_01841 - carboxy-SAM synthase, at 1,898,620 to 1,899,363 _01841 Position (kb) 1897 1898 1899Strain fitness (log2 ratio) -1 0 1 2at 1896.749 kb on + strandat 1896.750 kb on - strandat 1896.812 kb on - strand, within ECD_01838at 1896.834 kb on - strand, within ECD_01838at 1896.947 kb on - strand, within ECD_01838at 1897.072 kb on - strand, within ECD_01838at 1897.126 kb on + strand, within ECD_01838at 1897.126 kb on + strand, within ECD_01838at 1897.127 kb on - strand, within ECD_01838at 1897.244 kb on + strand, within ECD_01838at 1897.259 kb on + strand, within ECD_01838at 1897.260 kb on - strandat 1897.927 kb on + strand, within ECD_01839at 1898.050 kb on + strandat 1898.142 kb on + strandat 1898.147 kb on + strandat 1898.147 kb on + strandat 1898.199 kb on + strandat 1898.199 kb on + strandat 1898.209 kb on + strandat 1898.546 kb on + strandat 1898.587 kb on + strandat 1898.587 kb on + strandat 1898.734 kb on + strand, within ECD_01841at 1898.760 kb on + strand, within ECD_01841at 1898.761 kb on - strand, within ECD_01841at 1898.922 kb on + strand, within ECD_01841at 1898.951 kb on + strand, within ECD_01841

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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1,896,749 + -0.1
1,896,750 - +1.3
1,896,812 - ECD_01838 0.11 +0.2
1,896,834 - ECD_01838 0.15 -0.6
1,896,947 - ECD_01838 0.35 +0.3
1,897,072 - ECD_01838 0.57 +0.3
1,897,126 + ECD_01838 0.66 +0.8
1,897,126 + ECD_01838 0.66 -0.6
1,897,127 - ECD_01838 0.66 -0.5
1,897,244 + ECD_01838 0.87 -0.2
1,897,259 + ECD_01838 0.90 +1.9
1,897,260 - -0.6
1,897,927 + ECD_01839 0.75 -0.5
1,898,050 + +0.3
1,898,142 + +1.8
1,898,147 + -1.5
1,898,147 + +0.8
1,898,199 + -0.3
1,898,199 + -0.2
1,898,209 + +1.3
1,898,546 + -0.7
1,898,587 + +0.1
1,898,587 + -0.8
1,898,734 + ECD_01841 0.15 -0.7
1,898,760 + ECD_01841 0.19 -1.3
1,898,761 - ECD_01841 0.19 -0.3
1,898,922 + ECD_01841 0.41 -0.5
1,898,951 + ECD_01841 0.44 -0.0

Or see this region's nucleotide sequence