Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01837 and ECD_01838 are separated by 309 nucleotides ECD_01838 and ECD_01839 overlap by 4 nucleotides ECD_01839 and ECD_01840 are separated by 52 nucleotides ECD_01840 and ECD_01841 are separated by 40 nucleotides
ECD_01837: ECD_01837 - aspartyl-tRNA synthetase, at 1,894,668 to 1,896,440
_01837
ECD_01838: ECD_01838 - isochorismatase family protein, at 1,896,750 to 1,897,316
_01838
ECD_01839: ECD_01839 - UPF0759 family protein, at 1,897,313 to 1,898,131
_01839
ECD_01840: ECD_01840 - MAPEG family inner membrane protein, at 1,898,184 to 1,898,579
_01840
ECD_01841: ECD_01841 - carboxy-SAM synthase, at 1,898,620 to 1,899,363
_01841
Position (kb)
1897
1898
1899 Strain fitness (log2 ratio)
-1
0
1
2 at 1896.749 kb on + strand at 1896.750 kb on - strand at 1896.812 kb on - strand, within ECD_01838 at 1896.834 kb on - strand, within ECD_01838 at 1896.947 kb on - strand, within ECD_01838 at 1897.072 kb on - strand, within ECD_01838 at 1897.126 kb on + strand, within ECD_01838 at 1897.126 kb on + strand, within ECD_01838 at 1897.127 kb on - strand, within ECD_01838 at 1897.244 kb on + strand, within ECD_01838 at 1897.259 kb on + strand, within ECD_01838 at 1897.260 kb on - strand at 1897.927 kb on + strand, within ECD_01839 at 1898.050 kb on + strand at 1898.142 kb on + strand at 1898.147 kb on + strand at 1898.147 kb on + strand at 1898.199 kb on + strand at 1898.199 kb on + strand at 1898.209 kb on + strand at 1898.546 kb on + strand at 1898.587 kb on + strand at 1898.587 kb on + strand at 1898.734 kb on + strand, within ECD_01841 at 1898.760 kb on + strand, within ECD_01841 at 1898.761 kb on - strand, within ECD_01841 at 1898.922 kb on + strand, within ECD_01841 at 1898.951 kb on + strand, within ECD_01841
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 1,896,749 + -0.1 1,896,750 - +1.3 1,896,812 - ECD_01838 0.11 +0.2 1,896,834 - ECD_01838 0.15 -0.6 1,896,947 - ECD_01838 0.35 +0.3 1,897,072 - ECD_01838 0.57 +0.3 1,897,126 + ECD_01838 0.66 +0.8 1,897,126 + ECD_01838 0.66 -0.6 1,897,127 - ECD_01838 0.66 -0.5 1,897,244 + ECD_01838 0.87 -0.2 1,897,259 + ECD_01838 0.90 +1.9 1,897,260 - -0.6 1,897,927 + ECD_01839 0.75 -0.5 1,898,050 + +0.3 1,898,142 + +1.8 1,898,147 + -1.5 1,898,147 + +0.8 1,898,199 + -0.3 1,898,199 + -0.2 1,898,209 + +1.3 1,898,546 + -0.7 1,898,587 + +0.1 1,898,587 + -0.8 1,898,734 + ECD_01841 0.15 -0.7 1,898,760 + ECD_01841 0.19 -1.3 1,898,761 - ECD_01841 0.19 -0.3 1,898,922 + ECD_01841 0.41 -0.5 1,898,951 + ECD_01841 0.44 -0.0
Or see this region's nucleotide sequence