Strain Fitness in Escherichia coli BL21 around ECD_01770

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01769 and ECD_01770 are separated by 102 nucleotidesECD_01770 and ECD_01771 are separated by 190 nucleotides ECD_01769: ECD_01769 - transcriptional activator of dmlA, at 1,826,612 to 1,827,535 _01769 ECD_01770: ECD_01770 - D-malate oxidase, NAD-dependent; putative tartrate dehydrogenase, at 1,827,638 to 1,828,723 _01770 ECD_01771: ECD_01771 - putative transporter, at 1,828,914 to 1,830,359 _01771 Position (kb) 1827 1828 1829Strain fitness (log2 ratio) -1 0 1 2at 1827.238 kb on + strand, within ECD_01769at 1827.589 kb on + strandat 1827.788 kb on + strand, within ECD_01770at 1827.854 kb on + strand, within ECD_01770at 1828.187 kb on - strand, within ECD_01770

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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1,827,238 + ECD_01769 0.68 -0.7
1,827,589 + +0.9
1,827,788 + ECD_01770 0.14 +0.2
1,827,854 + ECD_01770 0.20 +1.2
1,828,187 - ECD_01770 0.51 +2.5

Or see this region's nucleotide sequence