Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01754 and ECD_01755 are separated by 180 nucleotides ECD_01755 and ECD_01756 are separated by 42 nucleotides ECD_01756 and ECD_01757 are separated by 0 nucleotides ECD_01757 and ECD_01758 are separated by 169 nucleotides
ECD_01754: ECD_01754 - putative membrane-anchored diguanylate cyclase, at 1,814,762 to 1,816,237
_01754
ECD_01755: ECD_01755 - putative diguanylate cyclase, at 1,816,418 to 1,817,908
_01755
ECD_01756: ECD_01756 - aminoacyl-tRNA editing domain protein, at 1,817,951 to 1,818,454
_01756
ECD_01757: ECD_01757 - uncharacterized protein, at 1,818,455 to 1,818,559
_01757
ECD_01758: ECD_01758 - UPF0756 family putative inner membrane protein, at 1,818,729 to 1,819,175
_01758
Position (kb) 1816
1817
1818 Strain fitness (log2 ratio) -2
-1
0
1 at 1816.432 kb on + strand at 1816.576 kb on + strand, within ECD_01755 at 1816.580 kb on + strand, within ECD_01755 at 1817.261 kb on - strand, within ECD_01755 at 1818.456 kb on + strand at 1818.456 kb on + strand at 1818.457 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 1,816,432 + +1.4 1,816,576 + ECD_01755 0.11 -2.1 1,816,580 + ECD_01755 0.11 +1.0 1,817,261 - ECD_01755 0.57 -0.8 1,818,456 + -0.5 1,818,456 + +1.0 1,818,457 - -1.1
Or see this region's nucleotide sequence