Strain Fitness in Escherichia coli BL21 around ECD_01703

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01702 and ECD_01703 are separated by 12 nucleotidesECD_01703 and ECD_01704 are separated by 104 nucleotidesECD_01704 and ECD_01705 are separated by 7 nucleotides ECD_01702: ECD_01702 - chito-oligosaccharide deacetylase, at 1,760,799 to 1,761,548 _01702 ECD_01703: ECD_01703 - phospho-chitobiase; general 6-phospho-beta-glucosidase activity, at 1,761,561 to 1,762,913 _01703 ECD_01704: ECD_01704 - repressor of chb operon for N,N'-diacetylchitobiose utilization, at 1,763,018 to 1,763,860 _01704 ECD_01705: ECD_01705 - N,N'-diacetylchitobiose-specific enzyme IIA component of PTS, at 1,763,868 to 1,764,218 _01705 Position (kb) 1761 1762 1763Strain fitness (log2 ratio) -1 0 1 2 3at 1760.921 kb on + strand, within ECD_01702at 1761.162 kb on - strand, within ECD_01702at 1761.332 kb on + strand, within ECD_01702at 1761.332 kb on + strand, within ECD_01702at 1761.333 kb on - strand, within ECD_01702at 1761.538 kb on - strandat 1761.798 kb on - strand, within ECD_01703at 1761.905 kb on - strand, within ECD_01703at 1761.905 kb on - strand, within ECD_01703at 1761.968 kb on - strand, within ECD_01703at 1762.129 kb on + strand, within ECD_01703at 1762.142 kb on - strand, within ECD_01703

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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1,760,921 + ECD_01702 0.16 +2.4
1,761,162 - ECD_01702 0.48 -0.3
1,761,332 + ECD_01702 0.71 +2.9
1,761,332 + ECD_01702 0.71 +2.2
1,761,333 - ECD_01702 0.71 -1.3
1,761,538 - +0.0
1,761,798 - ECD_01703 0.18 +0.3
1,761,905 - ECD_01703 0.25 +1.6
1,761,905 - ECD_01703 0.25 -0.3
1,761,968 - ECD_01703 0.30 +1.2
1,762,129 + ECD_01703 0.42 +3.3
1,762,142 - ECD_01703 0.43 +0.5

Or see this region's nucleotide sequence