Strain Fitness in Escherichia coli BL21 around ECD_01604

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01603 and ECD_01604 are separated by 610 nucleotidesECD_01604 and ECD_01605 are separated by 105 nucleotidesECD_01605 and ECD_01606 are separated by 43 nucleotides ECD_01603: ECD_01603 - DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III), at 1,656,719 to 1,657,354 _01603 ECD_01604: ECD_01604 - dipeptide and tripeptide permease A, at 1,657,965 to 1,659,467 _01604 ECD_01605: ECD_01605 - glutathionine S-transferase, at 1,659,573 to 1,660,178 _01605 ECD_01606: ECD_01606 - pyridoxamine kinase, at 1,660,222 to 1,661,085 _01606 Position (kb) 1657 1658 1659 1660Strain fitness (log2 ratio) -2 -1 0 1at 1657.908 kb on + strandat 1658.034 kb on + strandat 1658.203 kb on + strand, within ECD_01604at 1658.318 kb on + strand, within ECD_01604at 1658.351 kb on + strand, within ECD_01604at 1658.385 kb on + strand, within ECD_01604at 1658.427 kb on + strand, within ECD_01604at 1658.462 kb on + strand, within ECD_01604at 1658.609 kb on + strand, within ECD_01604at 1660.068 kb on + strand, within ECD_01605

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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1,657,908 + +1.3
1,658,034 + +1.0
1,658,203 + ECD_01604 0.16 +0.4
1,658,318 + ECD_01604 0.23 -1.4
1,658,351 + ECD_01604 0.26 -0.5
1,658,385 + ECD_01604 0.28 -1.4
1,658,427 + ECD_01604 0.31 -0.2
1,658,462 + ECD_01604 0.33 -0.6
1,658,609 + ECD_01604 0.43 -2.5
1,660,068 + ECD_01605 0.82 -0.2

Or see this region's nucleotide sequence